capcruncher-tools>=0.1.9
click<=8.2.0
cookiecutter<=2.1.1
cooler<=0.9.2
duckdb<=0.9.1
grpcio>=1.54.2
h5py
ibis-framework[duckdb]<=7.0.0,>6.1.0
loguru<=0.7.2
more-itertools
numpy<=1.23
pandas<=2.1.2
pandera<=0.17.2
panel<=1.3.0
plotly<=5.18.0,>5.0.0
pyarrow<14.0.0,>11.0.0
pybedtools<=0.9.0
polars<=0.19.15
pyranges<=0.0.129
pydantic<2.6.0,>2.4.0
pysam<=0.21.0,>0.15.0
quarto
ray>=2.8.0
seaborn<=0.12.2
snakemake<=7.32.4
tqdm<=4.65.0
trackhub<=0.2.4
tracknado
ujson<=5.7.0
xopen
snakemake_wrapper_utils
xxhash<=3.4.1

[full]
pydeseq2
coolbox

[stats]
pydeseq2

[visualisation]
coolbox
