Metadata-Version: 1.1
Name: vcfViewer
Version: 0.1
Summary: A toolkit for visualizing VCF metadata.
Home-page: https://github.com/tomsasani/vcfViewer
Author: Tom Sasani
Author-email: tom.sasani@utah.edu
License: MIT
Description: # vcfViewer
        A toolkit for visualizing variant call format (VCF) file data.
        
        *Developed by Tom Sasani for MDCRC 6521 at the University of Utah.*
        
        ## About
        
        **vcfViewer** is a basic toolkit that allows users to create useful visualizations of VCF metadata in [bokeh](http://bokeh.pydata.org/en/latest/). For example, users can plot quality scores, 
        
        
        ## Usage
        
        To visually determine which variants in a VCF meet a quality score threshold, simply run:
        
        `python plot_qual.py [vcf] [threshold]`
        
        ## Dependencies
        
        **bokeh** 
        
        To install, run `conda install bokeh`.
        
        **cyvcf2**
        
        To install, run `pip install cyvcf2`.
        
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 2.7
