numpy>=1.13
scipy
h5py
torch>=1.5.0
networkx
pdb2sql
sklearn
chart-studio
BioPython
python-louvain
markov-clustering
torch-sparse
torch-scatter
torch-cluster
torch-spline-conv
torch-geometric

[dev]
prospector[with_pyroma]
yapf
isort

[doc]
recommonmark
sphinx
sphinx_rtd_theme

[test]
coverage
pycodestyle
pytest
pytest-cov
pytest-runner
coveralls
