LICENSE
MANIFEST.in
README.md
setup.py
docs/CONTRIBUTING.md
docs/index.rst
docs/snakescale.rst
snakescale/__init__.py
snakescale/formatters.py
snakescale/resources.py
snakescale/testing.py
snakescale/utils.py
snakescale.egg-info/PKG-INFO
snakescale.egg-info/SOURCES.txt
snakescale.egg-info/dependency_links.txt
snakescale.egg-info/not-zip-safe
snakescale.egg-info/top_level.txt
snakescale/wrappers/latest/bedtools/subtract/environment.yaml
snakescale/wrappers/latest/bedtools/subtract/meta.yaml
snakescale/wrappers/latest/bedtools/subtract/wrapper.py
snakescale/wrappers/latest/bedtools/subtract/test/Snakefile
snakescale/wrappers/latest/bedtools/subtract/test/data/a.bed
snakescale/wrappers/latest/bedtools/subtract/test/data/b.bed
snakescale/wrappers/latest/bedtools/subtract/test/data/ref.genome
snakescale/wrappers/latest/bedtools/subtract/test/data/result.bed
snakescale/wrappers/latest/bwa/mem/environment.yaml
snakescale/wrappers/latest/bwa/mem/meta.yaml
snakescale/wrappers/latest/bwa/mem/wrapper.py
snakescale/wrappers/latest/dwgsim/environment.yaml
snakescale/wrappers/latest/dwgsim/metal.yaml
snakescale/wrappers/latest/dwgsim/wrapper.py
snakescale/wrappers/latest/fgbio/clip_bam/environment.yaml
snakescale/wrappers/latest/fgbio/clip_bam/meta.yaml
snakescale/wrappers/latest/fgbio/clip_bam/wrapper.py
snakescale/wrappers/latest/kraken/classify_from_paired_sam/environment.yaml
snakescale/wrappers/latest/kraken/classify_from_paired_sam/meta.yaml
snakescale/wrappers/latest/kraken/classify_from_paired_sam/wrapper.py
snakescale/wrappers/latest/kraken/report/environment.yaml
snakescale/wrappers/latest/kraken/report/meta.yaml
snakescale/wrappers/latest/kraken/report/wrapper.py
snakescale/wrappers/latest/picard/bed_to_interval/environment.yaml
snakescale/wrappers/latest/picard/bed_to_interval/wrapper.py
snakescale/wrappers/latest/picard/check_illumina_directory/environment.yaml
snakescale/wrappers/latest/picard/check_illumina_directory/wrapper.py
snakescale/wrappers/latest/picard/collect_alignment_summary_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_alignment_summary_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_base_distribution_by_cycle/environment.yaml
snakescale/wrappers/latest/picard/collect_base_distribution_by_cycle/wrapper.py
snakescale/wrappers/latest/picard/collect_gc_bias_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_gc_bias_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_hs_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_hs_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_illumina_basecalling_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_illumina_basecalling_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_illumina_lane_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_illumina_lane_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_insert_size_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_insert_size_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_oxo_g_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_oxo_g_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_quality_yield_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_quality_yield_metrics/wrapper.py
snakescale/wrappers/latest/picard/collect_sequencing_artifact_metrics/environment.yaml
snakescale/wrappers/latest/picard/collect_sequencing_artifact_metrics/wrapper.py
snakescale/wrappers/latest/picard/extract_illumina_barcodes/environment.yaml
snakescale/wrappers/latest/picard/extract_illumina_barcodes/wrapper.py
snakescale/wrappers/latest/picard/filter_sam_reads/environment.yaml
snakescale/wrappers/latest/picard/filter_sam_reads/wrapper.py
snakescale/wrappers/latest/picard/illumina_basecalls_to_sam/environment.yaml
snakescale/wrappers/latest/picard/illumina_basecalls_to_sam/wrapper.py
snakescale/wrappers/latest/picard/mark_duplicates/environment.yaml
snakescale/wrappers/latest/picard/mark_duplicates/wrapper.py
snakescale/wrappers/latest/picard/merge_sam_files/environment.yaml
snakescale/wrappers/latest/picard/merge_sam_files/wrapper.py
snakescale/wrappers/latest/picard/quality_score_distribution/environment.yaml
snakescale/wrappers/latest/picard/quality_score_distribution/wrapper.py
snakescale/wrappers/latest/picard/sort_sam/environment.yaml
snakescale/wrappers/latest/picard/sort_sam/wrapper.py
snakescale/wrappers/latest/picard/sort_vcf/environment.yaml
snakescale/wrappers/latest/picard/sort_vcf/wrapper.py
snakescale/wrappers/latest/scalpel/single/environment.yaml
snakescale/wrappers/latest/scalpel/single/meta.yaml
snakescale/wrappers/latest/scalpel/single/wrapper.py
snakescale/wrappers/latest/vardictjava/environment.yaml
snakescale/wrappers/latest/vardictjava/wrapper.py