# Dependencies required for running the "stable" version of alphaDIA.
# Only usage of fixed versions is allowed, and all dependencies listed here must also be
# included in `requirements_loose.txt` (enforced by a test).
# TODO clean the requirements
numba==0.60.0
numpy<2.0 # test: tolerate_version  # rdkit==2024.3.3 is not compatible with numpy >= 2.0
pyyaml==6.0.2
pandas==2.2.3
h5py==3.12.1
contextlib2==21.6.0
xxhash==3.5.0
biopython==1.84
psutil==6.1.0
tqdm==4.67.0
scikit-learn==1.5.2
regex==2024.11.6
# pydivsufsort
dask==2024.8.0
dask_expr==1.1.10
pyahocorasick==2.1.0
pyteomics==4.7.5
lxml==5.3.0
rdkit==2024.3.3
