LICENSE
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
alphabase/__init__.py
alphabase/cli.py
alphabase/gui.py
alphabase/utils.py
alphabase/yaml_utils.py
alphabase.egg-info/PKG-INFO
alphabase.egg-info/SOURCES.txt
alphabase.egg-info/dependency_links.txt
alphabase.egg-info/entry_points.txt
alphabase.egg-info/requires.txt
alphabase.egg-info/top_level.txt
alphabase/constants/__init__.py
alphabase/constants/_const.py
alphabase/constants/aa.py
alphabase/constants/atom.py
alphabase/constants/element.py
alphabase/constants/isotope.py
alphabase/constants/modification.py
alphabase/constants/const_files/__emass_element.yaml
alphabase/constants/const_files/amino_acid.tsv
alphabase/constants/const_files/common_constants.yaml
alphabase/constants/const_files/contaminants.fasta
alphabase/constants/const_files/modification.tsv
alphabase/constants/const_files/nist_element.yaml
alphabase/constants/const_files/protease.yaml
alphabase/constants/const_files/psm_reader.yaml
alphabase/constants/const_files/quant_reader_config.yaml
alphabase/io/__init__.py
alphabase/io/hdf.py
alphabase/io/tempmmap.py
alphabase/peptide/__init__.py
alphabase/peptide/fragment.py
alphabase/peptide/mass_calc.py
alphabase/peptide/mobility.py
alphabase/peptide/precursor.py
alphabase/protein/__init__.py
alphabase/protein/fasta.py
alphabase/protein/inference.py
alphabase/protein/lcp_digest.py
alphabase/protein/protein_level_decoy.py
alphabase/psm_reader/__init__.py
alphabase/psm_reader/alphadia_reader.py
alphabase/psm_reader/alphapept_reader.py
alphabase/psm_reader/dia_psm_reader.py
alphabase/psm_reader/keys.py
alphabase/psm_reader/maxquant_reader.py
alphabase/psm_reader/modification_mapper.py
alphabase/psm_reader/msfragger_reader.py
alphabase/psm_reader/pfind_reader.py
alphabase/psm_reader/psm_reader.py
alphabase/psm_reader/sage_reader.py
alphabase/psm_reader/utils.py
alphabase/quantification/quant_reader/config_dict_loader.py
alphabase/quantification/quant_reader/longformat_reader.py
alphabase/quantification/quant_reader/plexdia_reformatter.py
alphabase/quantification/quant_reader/quant_reader_manager.py
alphabase/quantification/quant_reader/quantreader_utils.py
alphabase/quantification/quant_reader/table_reformatter.py
alphabase/quantification/quant_reader/wideformat_reader.py
alphabase/smiles/__init__.py
alphabase/smiles/peptide.py
alphabase/smiles/smiles.py
alphabase/spectral_library/__init__.py
alphabase/spectral_library/base.py
alphabase/spectral_library/decoy.py
alphabase/spectral_library/flat.py
alphabase/spectral_library/reader.py
alphabase/spectral_library/translate.py
alphabase/spectral_library/validate.py
alphabase/tools/__init__.py
alphabase/tools/data_downloader.py
docs/conf.py
requirements/requirements.txt
requirements/requirements_development.txt
requirements/requirements_docs.txt
requirements/requirements_loose.txt
requirements/requirements_tests.txt
tests/__init__.py
tests/test_cli.py
tests/test_fragment.py
tests/test_gui.py
tests/test_peptide_smiles.py
tests/test_smiles.py
tests/integration/__init__.py
tests/integration/test_psm_readers.py
tests/unit/__init__.py
tests/unit/test_requirements.py
tests/unit/io/test_tempmmap.py
tests/unit/peptide/test_fragment.py
tests/unit/psm_reader/__init__.py
tests/unit/psm_reader/test_utils.py