Metadata-Version: 2.0
Name: baseqSNV
Version: 1.2.1
Summary: Pipeline for Running SNV analysis
Home-page: https://wgs.beiseq.cn
Author: Xiannian Zhang
Author-email: friedpine@gmail.com
License: UNKNOWN
Keywords: sample setuptools development
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Requires-Dist: baseq
Requires-Dist: click
Requires-Dist: configparser
Requires-Dist: matplotlib
Requires-Dist: pandas
Provides-Extra: dev
Requires-Dist: check-manifest; extra == 'dev'
Provides-Extra: test
Requires-Dist: coverage; extra == 'test'

# baseqSNV

This package wraps GATK4 and Mutect2 for predicting SNVs from genomic sequencing data.

## Install baseqSNV
We need python3 and a package called: baseq_drops, which could be installed by:

    pip install baseqSNV

After install, you will have a runnable command `baseqSNV`

For more detailed tutorial and information, please visit http://wgs.beiseq.cn/document_snv/index.html.

