.codecov.yml
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
Pipfile
Pipfile.lock
README.md
install.sh
setup.py
capture/__init__.py
capture/__main__.py
capture/app.py
capture/bam.py
capture/clean.py
capture/jobs.py
capture/join.py
capture/parse.py
capture/run.py
capture/split.py
capture/version.py
capture/test/test_bam.py
capture/test/test_clean.py
capture/test/test_join.py
capture/test/test_parse.py
capture/test/test_parse_random.py
capture/test/test_run.py
capture_assembler.egg-info/PKG-INFO
capture_assembler.egg-info/SOURCES.txt
capture_assembler.egg-info/dependency_links.txt
capture_assembler.egg-info/entry_points.txt
capture_assembler.egg-info/requires.txt
capture_assembler.egg-info/top_level.txt
data/20_reads.bam
data/20_reads.bam.bai
data/20_reads_R1.fastq
data/20_reads_R1.fastq.gz
data/20_reads_R2.fastq
data/20_reads_R2.fastq.gz
data/contigs_test_1.fasta
data/contigs_test_2.fasta
data/contigs_test_3.fasta
data/ecoli_1K_1.fq.gz
data/ecoli_1K_2.fq.gz
data/test_canu_in.fasta
data/test_canu_out.fasta