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Identifier Index
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A
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L
M
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P
Q
R
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T
U
V
W
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]
A
abcRun()
(in
Meld
)
addData()
(in
_BayesVar
)
B
basicfit()
(in
Meld
)
Beta()
(in
BIP.Bayes.like
)
bvariables
(in
BIP.Bayes.general
)
Bayes
(in
BIP
)
Binomial()
(in
BIP.Bayes.like
)
Bernoulli()
(in
BIP.Bayes.like
)
BIP
C
calculateBaseWeights()
(in
Condensation
)
condensation
(in
BIP.SMC
)
conjugate
(in
BIP.Bayes
)
Categor()
(in
BIP.Bayes.like
)
Condensation
(in
BIP.SMC.condensation
)
Continuous()
(in
BIP.Bayes.general.bvariables
)
clearFig()
(in
RTplot
)
conjlist
(in
BIP.Bayes.general.bvariables
)
D
Discrete()
(in
BIP.Bayes.general.bvariables
)
display()
(in
Model
)
dispatch()
(in
BIP.SDE.gillespie
)
dtplot
(in
BIP.Bayes.Melding
)
E
enumRun()
(in
BIP.Bayes.Melding
)
evaluateObservationDensity()
(in
Model
)
evaluate_gaussian()
(in
BIP.SMC.condensation
)
example
(in
BIP.SDE
)
F
f1()
(in
BIP.SDE.example
)
f4()
(in
BIP.SDE.example
)
find_best_tau()
(in
BIP.Bayes.like
)
f2()
(in
BIP.SDE.example
)
f5()
(in
BIP.SDE.example
)
f3()
(in
BIP.SDE.example
)
filtM()
(in
Meld
)
G
Gamma()
(in
BIP.Bayes.like
)
getPriorDist()
(in
_BayesVar
)
GlobalData
(in
BIP.SMC.condensation
)
general
(in
BIP.Bayes
)
getPriorSample()
(in
_BayesVar
)
GSSA()
(in
Model
)
getPosteriors()
(in
Meld
)
getStats()
(in
Model
)
getPosteriorSample()
(in
_BayesVar
)
gillespie
(in
BIP.SDE
)
I
ini
(in
BIP.SDE.example
)
iterate()
(in
Model
)
IterationData
(in
BIP.SMC.condensation
)
L
lhs
(in
BIP.Bayes
)
lhsFromSample()
(in
BIP.Bayes.lhs
)
logPooling()
(in
Meld
)
lhs()
(in
BIP.Bayes.lhs
)
like
(in
BIP.Bayes
)
lhsFromDensity()
(in
BIP.Bayes.lhs
)
Lognormal()
(in
BIP.Bayes.like
)
M
M
(in
BIP.SDE.example
)
Meld
(in
BIP.Bayes.Melding
)
Model
(in
BIP.SMC.condensation
)
main()
(in
BIP.SDE.gillespie
)
Melding
(in
BIP.Bayes
)
model()
(in
BIP.Bayes.Melding
)
main2()
(in
BIP.Bayes.Melding
)
Model
(in
BIP.SDE.gillespie
)
N
Negbin()
(in
BIP.Bayes.like
)
Normal()
(in
BIP.Bayes.like
)
O
obtainObservations()
(in
Model
)
P
p1()
(in
BIP.SDE.gillespie
)
plothist()
(in
RTplot
)
predictNewBases()
(in
Condensation
)
p2()
(in
BIP.SDE.gillespie
)
plotlines()
(in
RTplot
)
predictSamplePosition()
(in
Model
)
phiplot
(in
BIP.Bayes.Melding
)
plotRaHist()
(in
BIP.Bayes.Melding
)
propf
(in
BIP.SDE.example
)
pickBaseSample()
(in
Condensation
)
Poisson()
(in
BIP.Bayes.like
)
R
r
(in
BIP.SDE.example
)
run()
(in
Meld
)
runModel()
(in
Meld
)
realtime
(in
BIP.Viz
)
run()
(in
Model
)
RTplot
(in
BIP.Viz.realtime
)
runFilter()
(in
Condensation
)
S
scatter()
(in
RTplot
)
setPhiFromData()
(in
Meld
)
Simple()
(in
BIP.Bayes.like
)
SDE
(in
BIP
)
setTheta()
(in
Meld
)
sir()
(in
Meld
)
ser
(in
BIP.SDE.gillespie
)
setThetaFromData()
(in
Meld
)
SMC
(in
BIP
)
setPhi()
(in
Meld
)
setupPriorConditions()
(in
Model
)
T
t0
(in
BIP.SDE.example
)
thplot
(in
BIP.Bayes.Melding
)
tmat
(in
BIP.SDE.example
)
U
updateAfterIterating()
(in
Condensation
)
V
Viz
(in
BIP.Bayes.Melding
)
Viz
(in
BIP
)
vnames
(in
BIP.SDE.example
)
W
Weibull()
(in
BIP.Bayes.like
)
_
__BayesC
(in
BIP.Bayes.general.bvariables
)
__init__()
(in
Condensation
)
_histFromRA()
(in
RTplot
)
__BayesD
(in
BIP.Bayes.general.bvariables
)
__init__()
(in
GlobalData
)
_Likelihood()
(in
_BayesVar
)
__init__()
(in
Meld
)
__init__()
(in
IterationData
)
_linesFromRA()
(in
RTplot
)
__init__()
(in
_BayesVar
)
__init__()
(in
Model
)
_postFromConjugate()
(in
_BayesVar
)
__init__()
(in
__BayesC
)
__init__()
(in
RTplot
)
_update()
(in
_BayesVar
)
__init__()
(in
__BayesD
)
_BayesVar
(in
BIP.Bayes.general.bvariables
)
__init__()
(in
Model
)
_flavorize()
(in
_BayesVar
)
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