BIP	BIP-module.html
BIP.Bayes	BIP.Bayes-module.html
BIP.Bayes.Melding	BIP.Bayes.Melding-module.html
BIP.Bayes.Melding.dtplot	BIP.Bayes.Melding-module.html#dtplot
BIP.Bayes.Melding.phiplot	BIP.Bayes.Melding-module.html#phiplot
BIP.Bayes.Melding.enumRun	BIP.Bayes.Melding-module.html#enumRun
BIP.Bayes.Melding.main2	BIP.Bayes.Melding-module.html#main2
BIP.Bayes.Melding.thplot	BIP.Bayes.Melding-module.html#thplot
BIP.Bayes.Melding.plotRaHist	BIP.Bayes.Melding-module.html#plotRaHist
BIP.Bayes.Melding.Viz	BIP.Bayes.Melding-module.html#Viz
BIP.Bayes.Melding.model	BIP.Bayes.Melding-module.html#model
BIP.Bayes.conjugate	BIP.Bayes.conjugate-module.html
BIP.Bayes.general	BIP.Bayes.general-module.html
BIP.Bayes.general.bvariables	BIP.Bayes.general.bvariables-module.html
BIP.Bayes.general.bvariables.Discrete	BIP.Bayes.general.bvariables-module.html#Discrete
BIP.Bayes.general.bvariables.conjlist	BIP.Bayes.general.bvariables-module.html#conjlist
BIP.Bayes.general.bvariables.Continuous	BIP.Bayes.general.bvariables-module.html#Continuous
BIP.Bayes.lhs	BIP.Bayes.lhs-module.html
BIP.Bayes.lhs.lhsFromSample	BIP.Bayes.lhs-module.html#lhsFromSample
BIP.Bayes.lhs.lhs	BIP.Bayes.lhs-module.html#lhs
BIP.Bayes.lhs.lhsFromDensity	BIP.Bayes.lhs-module.html#lhsFromDensity
BIP.Bayes.like	BIP.Bayes.like-module.html
BIP.Bayes.like.Binomial	BIP.Bayes.like-module.html#Binomial
BIP.Bayes.like.Lognormal	BIP.Bayes.like-module.html#Lognormal
BIP.Bayes.like.Normal	BIP.Bayes.like-module.html#Normal
BIP.Bayes.like.find_best_tau	BIP.Bayes.like-module.html#find_best_tau
BIP.Bayes.like.Weibull	BIP.Bayes.like-module.html#Weibull
BIP.Bayes.like.Simple	BIP.Bayes.like-module.html#Simple
BIP.Bayes.like.Beta	BIP.Bayes.like-module.html#Beta
BIP.Bayes.like.Gamma	BIP.Bayes.like-module.html#Gamma
BIP.Bayes.like.Poisson	BIP.Bayes.like-module.html#Poisson
BIP.Bayes.like.Bernoulli	BIP.Bayes.like-module.html#Bernoulli
BIP.Bayes.like.Categor	BIP.Bayes.like-module.html#Categor
BIP.Bayes.like.Negbin	BIP.Bayes.like-module.html#Negbin
BIP.SDE	BIP.SDE-module.html
BIP.SDE.example	BIP.SDE.example-module.html
BIP.SDE.example.f1	BIP.SDE.example-module.html#f1
BIP.SDE.example.f2	BIP.SDE.example-module.html#f2
BIP.SDE.example.f3	BIP.SDE.example-module.html#f3
BIP.SDE.example.f4	BIP.SDE.example-module.html#f4
BIP.SDE.example.f5	BIP.SDE.example-module.html#f5
BIP.SDE.example.tmat	BIP.SDE.example-module.html#tmat
BIP.SDE.example.t0	BIP.SDE.example-module.html#t0
BIP.SDE.example.M	BIP.SDE.example-module.html#M
BIP.SDE.example.propf	BIP.SDE.example-module.html#propf
BIP.SDE.example.r	BIP.SDE.example-module.html#r
BIP.SDE.example.ini	BIP.SDE.example-module.html#ini
BIP.SDE.example.vnames	BIP.SDE.example-module.html#vnames
BIP.SDE.gillespie	BIP.SDE.gillespie-module.html
BIP.SDE.gillespie.ser	BIP.SDE.gillespie-module.html#ser
BIP.SDE.gillespie.dispatch	BIP.SDE.gillespie-module.html#dispatch
BIP.SDE.gillespie.main	BIP.SDE.gillespie-module.html#main
BIP.SDE.gillespie.p2	BIP.SDE.gillespie-module.html#p2
BIP.SDE.gillespie.p1	BIP.SDE.gillespie-module.html#p1
BIP.SMC	BIP.SMC-module.html
BIP.SMC.condensation	BIP.SMC.condensation-module.html
BIP.SMC.condensation.evaluate_gaussian	BIP.SMC.condensation-module.html#evaluate_gaussian
BIP.Viz	BIP.Viz-module.html
BIP.Viz.realtime	BIP.Viz.realtime-module.html
BIP.Bayes.Melding.Meld	BIP.Bayes.Melding.Meld-class.html
BIP.Bayes.Melding.Meld.filtM	BIP.Bayes.Melding.Meld-class.html#filtM
BIP.Bayes.Melding.Meld.logPooling	BIP.Bayes.Melding.Meld-class.html#logPooling
BIP.Bayes.Melding.Meld.run	BIP.Bayes.Melding.Meld-class.html#run
BIP.Bayes.Melding.Meld.runModel	BIP.Bayes.Melding.Meld-class.html#runModel
BIP.Bayes.Melding.Meld.setPhi	BIP.Bayes.Melding.Meld-class.html#setPhi
BIP.Bayes.Melding.Meld.setThetaFromData	BIP.Bayes.Melding.Meld-class.html#setThetaFromData
BIP.Bayes.Melding.Meld.sir	BIP.Bayes.Melding.Meld-class.html#sir
BIP.Bayes.Melding.Meld.abcRun	BIP.Bayes.Melding.Meld-class.html#abcRun
BIP.Bayes.Melding.Meld.setPhiFromData	BIP.Bayes.Melding.Meld-class.html#setPhiFromData
BIP.Bayes.Melding.Meld.setTheta	BIP.Bayes.Melding.Meld-class.html#setTheta
BIP.Bayes.Melding.Meld.basicfit	BIP.Bayes.Melding.Meld-class.html#basicfit
BIP.Bayes.Melding.Meld.getPosteriors	BIP.Bayes.Melding.Meld-class.html#getPosteriors
BIP.Bayes.Melding.Meld.__init__	BIP.Bayes.Melding.Meld-class.html#__init__
BIP.Bayes.general.bvariables._BayesVar	BIP.Bayes.general.bvariables._BayesVar-class.html
BIP.Bayes.general.bvariables._BayesVar._update	BIP.Bayes.general.bvariables._BayesVar-class.html#_update
BIP.Bayes.general.bvariables._BayesVar._flavorize	BIP.Bayes.general.bvariables._BayesVar-class.html#_flavorize
BIP.Bayes.general.bvariables._BayesVar.__init__	BIP.Bayes.general.bvariables._BayesVar-class.html#__init__
BIP.Bayes.general.bvariables._BayesVar.getPriorSample	BIP.Bayes.general.bvariables._BayesVar-class.html#getPriorSample
BIP.Bayes.general.bvariables._BayesVar.getPriorDist	BIP.Bayes.general.bvariables._BayesVar-class.html#getPriorDist
BIP.Bayes.general.bvariables._BayesVar._postFromConjugate	BIP.Bayes.general.bvariables._BayesVar-class.html#_postFromConjugate
BIP.Bayes.general.bvariables._BayesVar.getPosteriorSample	BIP.Bayes.general.bvariables._BayesVar-class.html#getPosteriorSample
BIP.Bayes.general.bvariables._BayesVar.addData	BIP.Bayes.general.bvariables._BayesVar-class.html#addData
BIP.Bayes.general.bvariables._BayesVar._Likelihood	BIP.Bayes.general.bvariables._BayesVar-class.html#_Likelihood
BIP.Bayes.general.bvariables.__BayesC	BIP.Bayes.general.bvariables.__BayesC-class.html
BIP.Bayes.general.bvariables._BayesVar._update	BIP.Bayes.general.bvariables._BayesVar-class.html#_update
BIP.Bayes.general.bvariables._BayesVar._flavorize	BIP.Bayes.general.bvariables._BayesVar-class.html#_flavorize
BIP.Bayes.general.bvariables.__BayesC.__init__	BIP.Bayes.general.bvariables.__BayesC-class.html#__init__
BIP.Bayes.general.bvariables._BayesVar.getPriorSample	BIP.Bayes.general.bvariables._BayesVar-class.html#getPriorSample
BIP.Bayes.general.bvariables._BayesVar.getPriorDist	BIP.Bayes.general.bvariables._BayesVar-class.html#getPriorDist
BIP.Bayes.general.bvariables._BayesVar._postFromConjugate	BIP.Bayes.general.bvariables._BayesVar-class.html#_postFromConjugate
BIP.Bayes.general.bvariables._BayesVar.getPosteriorSample	BIP.Bayes.general.bvariables._BayesVar-class.html#getPosteriorSample
BIP.Bayes.general.bvariables._BayesVar.addData	BIP.Bayes.general.bvariables._BayesVar-class.html#addData
BIP.Bayes.general.bvariables._BayesVar._Likelihood	BIP.Bayes.general.bvariables._BayesVar-class.html#_Likelihood
BIP.Bayes.general.bvariables.__BayesD	BIP.Bayes.general.bvariables.__BayesD-class.html
BIP.Bayes.general.bvariables._BayesVar._update	BIP.Bayes.general.bvariables._BayesVar-class.html#_update
BIP.Bayes.general.bvariables._BayesVar._flavorize	BIP.Bayes.general.bvariables._BayesVar-class.html#_flavorize
BIP.Bayes.general.bvariables.__BayesD.__init__	BIP.Bayes.general.bvariables.__BayesD-class.html#__init__
BIP.Bayes.general.bvariables._BayesVar.getPriorSample	BIP.Bayes.general.bvariables._BayesVar-class.html#getPriorSample
BIP.Bayes.general.bvariables._BayesVar.getPriorDist	BIP.Bayes.general.bvariables._BayesVar-class.html#getPriorDist
BIP.Bayes.general.bvariables._BayesVar._postFromConjugate	BIP.Bayes.general.bvariables._BayesVar-class.html#_postFromConjugate
BIP.Bayes.general.bvariables._BayesVar.getPosteriorSample	BIP.Bayes.general.bvariables._BayesVar-class.html#getPosteriorSample
BIP.Bayes.general.bvariables._BayesVar.addData	BIP.Bayes.general.bvariables._BayesVar-class.html#addData
BIP.Bayes.general.bvariables._BayesVar._Likelihood	BIP.Bayes.general.bvariables._BayesVar-class.html#_Likelihood
BIP.SDE.gillespie.Model	BIP.SDE.gillespie.Model-class.html
BIP.SDE.gillespie.Model.GSSA	BIP.SDE.gillespie.Model-class.html#GSSA
BIP.SDE.gillespie.Model.run	BIP.SDE.gillespie.Model-class.html#run
BIP.SDE.gillespie.Model.getStats	BIP.SDE.gillespie.Model-class.html#getStats
BIP.SDE.gillespie.Model.__init__	BIP.SDE.gillespie.Model-class.html#__init__
BIP.SMC.condensation.Condensation	BIP.SMC.condensation.Condensation-class.html
BIP.SMC.condensation.Condensation.calculateBaseWeights	BIP.SMC.condensation.Condensation-class.html#calculateBaseWeights
BIP.SMC.condensation.Condensation.updateAfterIterating	BIP.SMC.condensation.Condensation-class.html#updateAfterIterating
BIP.SMC.condensation.Condensation.runFilter	BIP.SMC.condensation.Condensation-class.html#runFilter
BIP.SMC.condensation.Condensation.predictNewBases	BIP.SMC.condensation.Condensation-class.html#predictNewBases
BIP.SMC.condensation.Condensation.pickBaseSample	BIP.SMC.condensation.Condensation-class.html#pickBaseSample
BIP.SMC.condensation.Condensation.__init__	BIP.SMC.condensation.Condensation-class.html#__init__
BIP.SMC.condensation.GlobalData	BIP.SMC.condensation.GlobalData-class.html
BIP.SMC.condensation.GlobalData.__init__	BIP.SMC.condensation.GlobalData-class.html#__init__
BIP.SMC.condensation.IterationData	BIP.SMC.condensation.IterationData-class.html
BIP.SMC.condensation.IterationData.__init__	BIP.SMC.condensation.IterationData-class.html#__init__
BIP.SMC.condensation.Model	BIP.SMC.condensation.Model-class.html
BIP.SMC.condensation.Model.predictSamplePosition	BIP.SMC.condensation.Model-class.html#predictSamplePosition
BIP.SMC.condensation.Model.obtainObservations	BIP.SMC.condensation.Model-class.html#obtainObservations
BIP.SMC.condensation.Model.evaluateObservationDensity	BIP.SMC.condensation.Model-class.html#evaluateObservationDensity
BIP.SMC.condensation.Model.iterate	BIP.SMC.condensation.Model-class.html#iterate
BIP.SMC.condensation.Model.display	BIP.SMC.condensation.Model-class.html#display
BIP.SMC.condensation.Model.__init__	BIP.SMC.condensation.Model-class.html#__init__
BIP.SMC.condensation.Model.setupPriorConditions	BIP.SMC.condensation.Model-class.html#setupPriorConditions
BIP.Viz.realtime.RTplot	BIP.Viz.realtime.RTplot-class.html
BIP.Viz.realtime.RTplot.plothist	BIP.Viz.realtime.RTplot-class.html#plothist
BIP.Viz.realtime.RTplot.clearFig	BIP.Viz.realtime.RTplot-class.html#clearFig
BIP.Viz.realtime.RTplot.plotlines	BIP.Viz.realtime.RTplot-class.html#plotlines
BIP.Viz.realtime.RTplot._linesFromRA	BIP.Viz.realtime.RTplot-class.html#_linesFromRA
BIP.Viz.realtime.RTplot.scatter	BIP.Viz.realtime.RTplot-class.html#scatter
BIP.Viz.realtime.RTplot.__init__	BIP.Viz.realtime.RTplot-class.html#__init__
BIP.Viz.realtime.RTplot._histFromRA	BIP.Viz.realtime.RTplot-class.html#_histFromRA
