Metadata-Version: 2.1
Name: scopyon
Version: 0.1.12
Summary: Monte Carlo simulation toolkit for bioimaging systems
Home-page: https://github.com/ecell/scopyon
Author: Masaki Watabe
Author-email: masaki@riken.jp
Maintainer: Kazunari Kaizu
Maintainer-email: kaizu@riken.jp
License: BSD-3-Clause
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: BSD License
Requires-Python: >=3
Description-Content-Type: text/markdown
Requires-Dist: numpy
Requires-Dist: scipy
Requires-Dist: matplotlib

scopyon
=======

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:microscope: Monte Carlo simulation toolkit for bioimaging systems

Requirements
------------

For `scopyon`, Python 3 and its libraries, `numpy`, `scipy` and `matplotlib`, are required. `scikit-image` is also needed by `scopyon.spot_detection`.

Installation
------------

```shell-session
$ pip install scopyon
```

or

```shell-session
$ python setup.py test install
```

Quick start
-----------

```shell-session
$ python examples/twocolor_script.py
```

![TIRF Image](https://github.com/ecell/scopyon/raw/master/examples/data/outputs_tirf/twocolor_0000000.png)

License
-------

`scopyon` is licensed under the terms of BSD-3-Clause (see [LICENSE](/LICENSE)).

Citation
--------

If this package contributes to your work, please cite the followings.

[https://doi.org/10.1371/journal.pone.0130089](https://doi.org/10.1371/journal.pone.0130089)


