Metadata-Version: 1.1
Name: bdgenomics.mango.pileup
Version: 0.0.2a0
Summary: bdgenomics.mango.pileup
Home-page: http://jupyter.org
Author: Alyssa Morrow
Author-email: akmorrow@berkeley.edu
License: UNKNOWN
Description: 
        
        bdgenomics.mango.pileup
        =======================
        bdgenomics.mango.pileup is a Jupyter widget that allows users to view genomic reads, variants and features in a python notebook.
        bdgenomics.mango.pileup builds off of `pileup.js <https://github.com/hammerlab/pileup.js>`__.
        Installation
        ============
        .. code-block:: bash
            pip install bdgenomics.mango.pileup
            jupyter nbextension enable --py --sys-prefix bdgenomics.mango.pileup  # can be skipped for notebook version 5.3 and above
        Usage
        =====
        .. code-block:: python
            import bdgenomics.mango.pileup as pileup
            from bdgenomics.mango.pileup.track import *
            import pandas as pd
        
            readsJson = pd.read_json("<path_to_GA4GH_json_file>")
            GA4GHAlignmentJson = readsJson.to_json()
        
            # make pileup track
            tracks=[Track(viz="pileup", label="My Reads", source=pileup.sources.GA4GHAlignmentJson(GA4GHAlignmentJson))]
        
            # render tracks in widget
            reads = pileup.PileupViewer(locus="chr17:1-100", reference="hg19", tracks=tracks)
            reads
        
Keywords: ipython,jupyter,widgets
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Framework :: IPython
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Multimedia :: Graphics
Classifier: Programming Language :: Python :: 2
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
