LICENSE
README.md
setup.py
brainlit/__init__.py
brainlit.egg-info/PKG-INFO
brainlit.egg-info/SOURCES.txt
brainlit.egg-info/dependency_links.txt
brainlit.egg-info/entry_points.txt
brainlit.egg-info/requires.txt
brainlit.egg-info/top_level.txt
brainlit/BrainLine/__init__.py
brainlit/BrainLine/analyze_results.py
brainlit/BrainLine/apply_ilastik.py
brainlit/BrainLine/imports.py
brainlit/BrainLine/parse_ara.py
brainlit/BrainLine/util.py
brainlit/algorithms/__init__.py
brainlit/algorithms/connect_fragments/__init__.py
brainlit/algorithms/connect_fragments/trace_evaluation.py
brainlit/algorithms/connect_fragments/viterbrain.py
brainlit/algorithms/detect_somas/__init__.py
brainlit/algorithms/detect_somas/detect.py
brainlit/algorithms/generate_fragments/__init__.py
brainlit/algorithms/generate_fragments/state_generation.py
brainlit/algorithms/generate_fragments/tube_seg.py
brainlit/algorithms/trace_analysis/__init__.py
brainlit/algorithms/trace_analysis/fit_spline.py
brainlit/algorithms/trace_analysis/spline_fxns.py
brainlit/feature_extraction/__init__.py
brainlit/feature_extraction/base.py
brainlit/feature_extraction/neighborhood.py
brainlit/map_neurons/__init__.py
brainlit/map_neurons/map_neurons.py
brainlit/napari_viterbrain/viterbrain_plugin.py
brainlit/preprocessing/__init__.py
brainlit/preprocessing/image_process.py
brainlit/preprocessing/preprocess.py
brainlit/utils/Neuron_trace.py
brainlit/utils/__init__.py
brainlit/utils/benchmarking_params.py
brainlit/utils/session.py
brainlit/utils/upload.py
brainlit/utils/util.py
brainlit/utils/write.py
brainlit/viz/__init__.py
brainlit/viz/swc2voxel.py