numpy>=1.24.0
numba>=0.58.0
biopython>=1.82
typer>=0.9.0
rich>=13.0.0
scipy>=1.11.0
leidenalg
python-igraph
pypubfigs>=1.1.0
matplotlib>=3.7.0

[dev]
pytest>=7.0
pytest-cov>=4.0
scikit-learn>=1.3.0

[gpu]
cupy-cuda12x
