AUTHORS.rst
CONTRIBUTING.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
allfreqs/__init__.py
allfreqs/allfreqs.py
allfreqs/classes.py
allfreqs/cli.py
allfreqs.egg-info/PKG-INFO
allfreqs.egg-info/SOURCES.txt
allfreqs.egg-info/dependency_links.txt
allfreqs.egg-info/entry_points.txt
allfreqs.egg-info/not-zip-safe
allfreqs.egg-info/requires.txt
allfreqs.egg-info/top_level.txt
docs/Makefile
docs/api.rst
docs/authors.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/readme.rst
docs/usage.rst
tests/conftest.py
tests/test_allfreqs.py
tests/test_classes.py
tests/data/sample_frequencies.csv
tests/data/sample_multialg.csv
tests/data/sample_multialg.fasta
tests/data/sample_multialg_noref.csv
tests/data/sample_multialg_noref.fasta
tests/data/sample_ref.csv
tests/data/sample_ref.fasta
tests/data/test.csv
tests/data/real_datasets/RSRS.fasta
tests/data/real_datasets/alg_L6.fasta
tests/data/real_datasets/alg_L6_df.csv
tests/data/real_datasets/alg_L6_noref.fasta
tests/data/real_datasets/alg_X.fasta
tests/data/real_datasets/alg_X_df.csv
tests/data/real_datasets/alg_X_noref.fasta
tests/data/real_datasets/frequencies_L6.csv
tests/data/real_datasets/frequencies_X.csv