.codecov.yml
.gitignore
.travis.yml
CONTRIBUTING.rst
Dockerfile
LICENSE
NEWS.rst
README.rst
pr-check.sh
pyproject.toml
requirements-dev.txt
run-checks.sh
run-tests.sh
setup.cfg
setup.py
.conda/build.sh
.conda/meta.yaml
.conda/bin/build
.conda/bin/docker
.conda/bin/install-miniconda
brainiak/__init__.py
brainiak/image.py
brainiak/io.py
brainiak/isfc.py
brainiak.egg-info/PKG-INFO
brainiak.egg-info/SOURCES.txt
brainiak.egg-info/dependency_links.txt
brainiak.egg-info/not-zip-safe
brainiak.egg-info/requires.txt
brainiak.egg-info/top_level.txt
brainiak/eventseg/__init__.py
brainiak/eventseg/_utils.pyx
brainiak/eventseg/event.py
brainiak/factoranalysis/__init__.py
brainiak/factoranalysis/htfa.py
brainiak/factoranalysis/tfa.py
brainiak/factoranalysis/tfa_extension.cpp
brainiak/fcma/__init__.py
brainiak/fcma/classifier.py
brainiak/fcma/cython_blas.pyx
brainiak/fcma/mvpa_voxelselector.py
brainiak/fcma/preprocessing.py
brainiak/fcma/util.py
brainiak/fcma/voxelselector.py
brainiak/fcma/src/fcma_extension.cc
brainiak/funcalign/__init__.py
brainiak/funcalign/rsrm.py
brainiak/funcalign/srm.py
brainiak/funcalign/sssrm.py
brainiak/hyperparamopt/__init__.py
brainiak/hyperparamopt/hpo.py
brainiak/reprsimil/__init__.py
brainiak/reprsimil/brsa.py
brainiak/searchlight/__init__.py
brainiak/searchlight/searchlight.py
brainiak/utils/__init__.py
brainiak/utils/fmrisim.py
brainiak/utils/grey_matter_mask.npy
brainiak/utils/utils.py
docs/.gitignore
docs/Makefile
docs/api.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/installation.rst
docs/release_notes.rst
docs/_static/placeholder.txt
docs/_templates/placeholder.txt
docs/newsfragments/304.trivial
docs/newsfragments/_template.jinja
examples/eventseg/HiddenMarkovModels.ipynb
examples/eventseg/requirements.txt
examples/eventseg/simulated_data.py
examples/factoranalysis/README.rst
examples/factoranalysis/get_tfa_input_from_nifti.py
examples/factoranalysis/htfa_cv_example.py
examples/factoranalysis/htfa_tutorial.ipynb
examples/factoranalysis/latent_factor_from_htfa.py
examples/factoranalysis/latent_factor_from_tfa.py
examples/factoranalysis/requirements.txt
examples/factoranalysis/run_mpi_htfa.sh
examples/factoranalysis/run_mpi_htfa_cv.sh
examples/fcma/classification.py
examples/fcma/corr_comp.py
examples/fcma/download_data.sh
examples/fcma/generate_fcma_data.py
examples/fcma/mvpa_classification.py
examples/fcma/mvpa_voxel_selection.py
examples/fcma/run_mvpa_voxel_selection.sh
examples/fcma/run_voxel_selection.sh
examples/fcma/voxel_selection.py
examples/funcalign/download-data.sh
examples/funcalign/requirements.txt
examples/funcalign/rsrm_synthetic_reconstruction.ipynb
examples/funcalign/searchlight_srm_example.py
examples/funcalign/searchlight_srm_time_segment_matching_example.ipynb
examples/funcalign/srm_image_prediction_example.ipynb
examples/funcalign/srm_image_prediction_example.py
examples/funcalign/srm_image_prediction_example_distributed.py
examples/funcalign/sssrm_image_prediction_example.py
examples/hyperparamopt/hpo_example.py
examples/hyperparamopt/requirements.txt
examples/isfc/download_data.sh
examples/isfc/isfc.py
examples/isfc/requirements.txt
examples/reprsimil/bayesian_rsa_example.ipynb
examples/reprsimil/example_design.1D
examples/reprsimil/group_brsa_example.ipynb
examples/reprsimil/requirements.txt
examples/searchlight/MNI152_T1_2mm_brain_mask.nii
examples/searchlight/a1plus_2mm.nii.gz
examples/searchlight/example_searchlight.py
examples/searchlight/genre_searchlight_example.py
examples/searchlight/requirements.txt
examples/utils/fmrisim_example.py
examples/utils/fmrisim_multivariate_example.ipynb
examples/utils/requirements.txt
tests/.flake8
tests/conftest.py
tests/eventseg/test_event.py
tests/factoranalysis/test_htfa.py
tests/factoranalysis/test_tfa.py
tests/fcma/test_classification.py
tests/fcma/test_mvpa_voxel_selection.py
tests/fcma/test_preprocessing.py
tests/fcma/test_util.py
tests/fcma/test_voxel_selection.py
tests/fcma/data/expected_processed_data.npy
tests/fcma/data/expected_raw_data.npy
tests/fcma/data/expected_searchlight_processed_data.npy
tests/funcalign/sr_v0_4.npz
tests/funcalign/test_rsrm.py
tests/funcalign/test_srm.py
tests/funcalign/test_srm_distributed.py
tests/funcalign/test_sssrm.py
tests/hyperparamopt/test_hpo.py
tests/image/test_image.py
tests/io/test_io.py
tests/io/data/epoch_labels.npy
tests/io/data/mask.nii.gz
tests/io/data/subject1_bet.nii.gz
tests/io/data/subject2_bet.nii.gz
tests/isfc/mask.nii.gz
tests/isfc/subj1.nii.gz
tests/isfc/subj2.nii.gz
tests/isfc/test_isfc.py
tests/reprsimil/example_design.1D
tests/reprsimil/test_brsa.py
tests/reprsimil/test_gbrsa.py
tests/searchlight/test_searchlight.py
tests/utils/example_design.1D
tests/utils/example_stimtime_1_AFNI.txt
tests/utils/example_stimtime_1_FSL.txt
tests/utils/example_stimtime_2_FSL.txt
tests/utils/test_fmrisim.py
tests/utils/test_utils.py