Metadata-Version: 2.1
Name: bbrc-bx
Version: 0.1.0.2.post1
Summary: BarcelonaBeta + XNAT = bx
Home-page: https://gitlab.com/xgrg/bx
Author: Greg Operto
Author-email: goperto@barcelonabeta.org
License: UNKNOWN
Download-URL: https://gitlab.com/xgrg/bx/-/archive/v0.0.9.6/bx-v0.0.9.6.tar.gz
Description: # bx
        
        [![pipeline status](https://gitlab.com/xgrg/bx/badges/master/pipeline.svg)](https://gitlab.com/xgrg/bx/commits/master)
        [![coverage report](https://gitlab.com/xgrg/bx/badges/master/coverage.svg)](https://gitlab.com/xgrg/bx/commits/master)
        [![downloads](https://img.shields.io/pypi/dm/bbrc-bx.svg)](https://pypi.org/project/bbrc-bx/)
        [![python versions](https://img.shields.io/pypi/pyversions/bbrc-bx.svg)](https://pypi.org/project/bbrc-bx/)
        [![pypi version](https://img.shields.io/pypi/v/bbrc-bx.svg)](https://pypi.org/project/bbrc-bx/)
        
        BarcelonaBeta + XNAT = BX
        
        ## Example:
        
        ![example](https://gitlab.com/xgrg/tweetit/raw/master/resources/004-Collecting-FreeSurfer-data-from-XNAT.gif)
        
        ## Usage
        
        ```
        bx <command> <subcommand> <resource_id> --config /path/to/.xnat.cfg --dest /tmp [--overwrite]
        ```
        
        ### Commands:
        
        ```
        bx nifti <resource_id>
        ```
        
        - Download a NIfTI from a given sequence from an experiment/entire project.
        
        
        ```
        bx spm12 volumes <resource_id>
        ```
        
        - Download a table with grey/white matter and CSF volumes estimated from SPM12 segmentations
        
        ```
        bx spm12 files <resource_id>
        ```
        
        - Download SPM12 segmentations from an experiment/entire project
        
        ```
        bx spm12 report <resource_id>
        ```
        
        - Download a quality report from an SPM12 segmentation for an experiment/entire project
        
        ```
        bx spm12 tests <resource_id>
        ```
        
        - Download a table with results from automatic validation tests from an SPM12 segmentation for an experiment/entire project
        
        ```
        bx freesurfer6 aseg <resource_id>
        ```
        
        - Download a table with FreeSurfer `aseg` results for an experiment/entire project
        
        ```
        bx freesurfer6 aparc <resource_id>
        ```
        
        - Download a table with FreeSurfer `aparc` results for an experiment/entire project
        
        ```
        bx freesurfer6 hippoSfVolumes <resource_id>
        ```
        
        - Download a table with FreeSurfer `hippoSfVolumes` results for an experiment/entire project
        
        ```
        bx freesurfer6 files <resource_id>
        ```
        
        - Download FreeSurfer6 segmentations from an experiment/entire project
        
        ```
        bx mrdates <resource_id>
        ```
        
        - Download a table with acquisition dates from an experiment/entire project
        
        
        ## Dependencies
        
        Requires the `bbrc` branch of [`pyxnat`](https://gitlab.com/xgrg/pyxnat).
        
        
        ## Install
        
        ```
        pip install bbrc-bx
        ```
        
        ## Development
        
        Please contact us for details on how to contribute.
        
        [![BarcelonaBeta](https://www.barcelonabeta.org/sites/default/files/logo-barcelona-beta_0.png)](https://www.barcelonabeta.org/)
        
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering
Classifier: Operating System :: Unix
Classifier: Programming Language :: Python :: 3.7
Description-Content-Type: text/markdown
