LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.py
src/rmats_long/FindAltTSEvents.c
src/rmats_long/FindAltTSEvents.py
src/rmats_long/__init__.c
src/rmats_long/__init__.py
src/rmats_long/add_novel_transcripts_to_gtf.c
src/rmats_long/add_novel_transcripts_to_gtf.py
src/rmats_long/calculate_isoform_proportion.c
src/rmats_long/calculate_isoform_proportion.py
src/rmats_long/check_asm_coupling.R
src/rmats_long/check_asm_coupling.c
src/rmats_long/check_asm_coupling.py
src/rmats_long/classify_isoform_differences.c
src/rmats_long/classify_isoform_differences.py
src/rmats_long/clean_espresso_gtf.c
src/rmats_long/clean_espresso_gtf.py
src/rmats_long/command_line_interface.c
src/rmats_long/command_line_interface.py
src/rmats_long/copy_gtf_attributes.c
src/rmats_long/copy_gtf_attributes.py
src/rmats_long/count_reads_for_asm_pairs.c
src/rmats_long/count_reads_for_asm_pairs.py
src/rmats_long/count_reads_for_asms.c
src/rmats_long/count_reads_for_asms.py
src/rmats_long/count_significant_isoforms.c
src/rmats_long/count_significant_isoforms.py
src/rmats_long/create_abundance_file_for_asm.c
src/rmats_long/create_abundance_file_for_asm.py
src/rmats_long/create_gtf_from_asm_definitions.c
src/rmats_long/create_gtf_from_asm_definitions.py
src/rmats_long/detect_differential_isoforms.R
src/rmats_long/detect_differential_isoforms.c
src/rmats_long/detect_differential_isoforms.py
src/rmats_long/detect_splicing_events.c
src/rmats_long/detect_splicing_events.py
src/rmats_long/get_junction_counts_from_graph.c
src/rmats_long/get_junction_counts_from_graph.py
src/rmats_long/organize_alignment_info_by_gene_and_chr.c
src/rmats_long/organize_alignment_info_by_gene_and_chr.py
src/rmats_long/organize_gene_info_by_chr.c
src/rmats_long/organize_gene_info_by_chr.py
src/rmats_long/plot_gene_sets.R
src/rmats_long/plot_simple_splice_graph.c
src/rmats_long/plot_simple_splice_graph.py
src/rmats_long/plot_splice_graph.c
src/rmats_long/plot_splice_graph.py
src/rmats_long/rmats_long.c
src/rmats_long/rmats_long.py
src/rmats_long/rmats_long_utils.c
src/rmats_long/rmats_long_utils.py
src/rmats_long/run_drimseq.R
src/rmats_long/run_stat_model.c
src/rmats_long/run_stat_model.py
src/rmats_long/simplify_alignment_info.c
src/rmats_long/simplify_alignment_info.py
src/rmats_long/source_code_commit.txt
src/rmats_long/visualize_isoforms.R
src/rmats_long/visualize_isoforms.c
src/rmats_long/visualize_isoforms.py
src/rmats_long/visualize_summary.R
src/rmats_long.egg-info/PKG-INFO
src/rmats_long.egg-info/SOURCES.txt
src/rmats_long.egg-info/dependency_links.txt
src/rmats_long.egg-info/entry_points.txt
src/rmats_long.egg-info/requires.txt
src/rmats_long.egg-info/top_level.txt