Metadata-Version: 1.0
Name: bbcu.vennDiagram
Version: 1.0.5
Summary: Create venn diagram from intersection between input files.
Home-page: UNKNOWN
Author: Refael Kohen
Author-email: refael.kohen@weizmann.ac.il
License: UNKNOWN
Description: Description
        -----------
        
        The script gets as input folder that contains separate file for each sample with 3 columns: gene name, p-value and log2 of fold change.
        The script filter according p-value (default: <=0.05) and log2 fold change (default: >=1) and create venn-diagram between the groups.
        
        The file names within the input folder should to be:
        
        sample1.csv, sample2.csv ... (until 6 groups)
        or
        sample1.xlsx, sample2.xlsx ...
        
        The files must to include the header line:
        Atnum,pv,log2FC
        
        You can see example of input and output files here:
        venn-diagram-exmple
        
        
        Run command
        -----------
        create-venn.py --input-dir YOUR-INPUT-FOLDER --output-dir YOUR-OUTPUT-DIR
        
        
        You can see another optional parameters with the command (--min-log-fc, --max-p-value, --total_gene_numbers):
        create-venn.py --help 
        
        
        Python version
        --------------
        
        This project is currently using Python 2.7
        
        
        Installation
        ------------
        
        It is recommended to use **virtualenv** to create a clean python environment.
        
        To install venn-diagram, use **pip**:
        
            pip install bbcu.venn-diagram
        
        
        Credit
        ------
        
        The plot of the venn made by pyvenn:
        https://github.com/tctianchi/pyvenn
        
        
        
        
        
Platform: UNKNOWN
