README.md
setup.py
COWBAT.egg-info/PKG-INFO
COWBAT.egg-info/SOURCES.txt
COWBAT.egg-info/dependency_links.txt
COWBAT.egg-info/requires.txt
COWBAT.egg-info/top_level.txt
cowbat/__init__.py
cowbat/assembly_pipeline.py
cowbat/assembly_typing.py
cowbat/get/__init__.py
cowbat/get/get_mlst.py
cowbat/get/get_rmlst.py
cowbat/get/rest_auth_class.py
cowbat/metagenomefilter/__init__.py
cowbat/metagenomefilter/automateCLARK.py
cowbat/metagenomefilter/filtermetagenome.py
cowbat/validation/validate_cowbat.py
tests/__init__.py
tests/test_imports.py
tests/test_pipeline.py