.gitignore
.travis.yml
LICENSE
README.md
setup.cfg
setup.py
biofluff.egg-info/PKG-INFO
biofluff.egg-info/SOURCES.txt
biofluff.egg-info/dependency_links.txt
biofluff.egg-info/requires.txt
biofluff.egg-info/top_level.txt
conda/environment.yml
docs/Makefile
docs/commands.rst
docs/conf.py
docs/index.rst
docs/installation.rst
docs/introduction.rst
docs/usage.rst
docs/img/H1.png
docs/img/H1_RPKM.png
docs/img/H1_RPKM_bandplot.png
docs/img/H3K27ac_kmeans5.png
docs/img/H3K27ac_kmeans5_bandplot.png
docs/img/H3K27ac_kmeans5_dynamics.png
docs/img/H3K27ac_kmeans5_dynamics_bandplot.png
docs/img/RNAseq_TREML_chr6_41112015_41135714_f0_normalized.png
docs/img/main.png
docs/img/norm_dynam_heatmaps.png
docs/img/profile_chr1_68602071_68612071.png
docs/img/profile_chr1_68602071_68612071_normalized.png
docs/img/profile_chr1_68602071_68612071_overlap.png
fluff/__init__.py
fluff/color.py
fluff/config.py
fluff/fluffio.py
fluff/parse.py
fluff/plot.py
fluff/track.py
fluff/util.py
fluff/commands/__init__.py
fluff/commands/bandplot.py
fluff/commands/heatmap.py
fluff/commands/profile.py
scripts/__init__.py
scripts/fluff
scripts/fluff_bandplot.py
scripts/fluff_heatmap.py
scripts/fluff_profile.py
tests/test_commands.py
tests/test_mirror.py
tests/test_plot.py
tests/test_track.py
tests/test_util.py
tests/data/H3K4me3.bam
tests/data/H3K4me3.bam.bai
tests/data/H3K4me3.bed
tests/data/heatmap_clusters.pickle
tests/data/heatmap_data.pickle
tests/data/profile.bam
tests/data/profile.bam.bai
tests/data/profile.bed
tests/data/profile.bed.gz
tests/data/profile.bed.gz.tbi
tests/data/profile.bg
tests/data/profile.bg.gz
tests/data/profile.bg.gz.tbi
tests/data/profile.bw
tests/data/profile.wig
tests/data/profile.wig.gz
tests/data/profile.wig.gz.tbi
tests/data/profile_region.bed
tests/data/testfragment.bed
tests/data/testfragments3.bed
tests/data/testfragments6.bed
tests/data/testregion.bed
tests/data/threeregions3.bed
tests/data/threeregions6.bed
tests/data/tss.bed
tests/data/tss_scaffold_1_nostrand.bed