Metadata-Version: 2.1
Name: NanoCount
Version: 1.0.0.post2
Summary: NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads
Home-page: https://github.com/a-slide/NanoCount/
Author: Adrien Leger
Author-email: aleg@ebi.ac.uk
License: MIT
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE

# NanoCount v1.0.0.post2

![NanoCount](./docs/pictures/NanoCount.png)

[![GitHub license](https://img.shields.io/github/license/a-slide/NanoCount.svg)](https://github.com/a-slide/NanoCount/blob/master/LICENSE)
[![Language](https://img.shields.io/badge/Language-Python3.6+-yellow.svg)](https://www.python.org/)
[![DOI](https://zenodo.org/badge/142873004.svg)](https://zenodo.org/badge/latestdoi/142873004)
[![Build Status](https://travis-ci.com/a-slide/NanoCount.svg?branch=master)](https://travis-ci.com/a-slide/NanoCount)

[![PyPI version](https://badge.fury.io/py/NanoCount.svg)](https://badge.fury.io/py/NanoCount)
[![PyPI downloads](https://pepy.tech/badge/NanoCount)](https://pepy.tech/project/NanoCount)
[![Anaconda Version](https://anaconda.org/aleg/nanocount/badges/version.svg)](https://anaconda.org/aleg/nanocount)
[![Anaconda Downloads](https://anaconda.org/aleg/nanocount/badges/downloads.svg)](https://anaconda.org/aleg/nanocount)
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**NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads**

Full documentation is available at https://adrienleger.com/NanoCount/

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### Disclaimer

Please be aware that NanoCount is a research package that is still under development.

The API, command line interface, and implementation might change without retro-compatibility.

It was tested under Linux Ubuntu 16.04 and in an HPC environment running under Red Hat Enterprise 7.1.

Thank you

### citation

The repository is archived at Zenodo. If you use NanoCount please cite as follow:

Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004

### licence

MIT (https://mit-license.org/)

Copyright © 2020 Adrien Leger

### Authors

* Adrien Leger / aleg@ebi.ac.uk / https://adrienleger.com

The package was inspired from https://github.com/jts/nanopore-rna-analysis by Jared Simpson

* Jared Simpson (@jts)

### Classifiers

* Development Status :: 3 - Alpha
* Intended Audience :: Science/Research
* Topic :: Scientific/Engineering :: Bio-Informatics
* License :: OSI Approved :: MIT License
* Programming Language :: Python :: 3


