Metadata-Version: 2.1
Name: apggr
Version: 1.0.1
Summary: A package for the analysis of population genetics for genomic regions (APGGR) targeting bacterial species.
Author-Email: Limbani Thengo <lthengo@gmail.com>
Requires-Dist: biopython>=1.84
Requires-Dist: matplotlib>=3.8.0
Requires-Dist: numpy>=1.26.4
Requires-Dist: pandas>=2.1.4
Requires-Dist: scikit-learn>=1.5.2
Description-Content-Type: text/markdown

# **Analysis of Population Genetics for Genomic Region (APGGR)**

A package with a set of modules for the analysis of population genetics of genomic regions targeting bacterial species

## Installation

pip install apggr

## Usage

Usage: apggr [--version\|--version-only] [--help] <command> <argument>

### **Commands**

cds

cluster

variant

### **Arguments**

--input-file

-d

--out

--out-file

--csv

## Examples

### BASH

apggr cds -f '/path/to/annotation/file' –csv 'path/to/csv'

### Python

from apggr.cds import get_cds_features
