Metadata-Version: 2.1
Name: biosaur2
Version: 0.1.4
Summary: A feature detection LC-MS1 spectra.
Home-page: UNKNOWN
Author: Mark Ivanov
Author-email: markmipt@gmail.com
License: License :: OSI Approved :: Apache Software License
Platform: UNKNOWN
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Education
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Chemistry
Classifier: Topic :: Scientific/Engineering :: Physics
Description-Content-Type: text/markdown
License-File: LICENSE

biosaur2 - A feature detection LC-MS1 spectra. This project is a rewriten version of Biosaur software (https://github.com/abdrakhimov1/Biosaur).
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The centroided mzML file is required for of the script.

Algorithm can be run with following command:

    biosaur2 path_to_MZML

The script output contains tsv table with peptide features.

Citing biosaur2
-------------------
Abdrakhimov, et al. Biosaur: An open-source Python software for liquid chromatography–mass spectrometry peptide feature detection with ion mobility support. https://doi.org/10.1002/rcm.9045

Installation
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Using the pip:

    pip install biosaur2
    

Links
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- GitHub repo & issue tracker: https://github.com/markmipt/biosaur2
- Mailing list: markmipt@gmail.com


