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AUTHORS
ChangeLog
Gemfile
LICENSE
Makefile
Pipfile
Pipfile.lock
README.md
_config.yml
biolink-model.graphql
biolink-model.owl
biolink-model.proto
biolink-model.shex
biolink-model.shexj
biolink-model.ttl
biolink-model.yaml
biolink-modeln.shex
biolink-modeln.shexj
context.jsonld
contextn.jsonld
index.md
init.sh
jekyll-theme-dinky.gemspec
notes.md
requirements.txt
setup.cfg
setup.py
tox.ini
about/mapping-neo4j.md
about/mapping-rdf.md
biolink/__init__.py
biolink/model.py
biolink_model.egg-info/PKG-INFO
biolink_model.egg-info/SOURCES.txt
biolink_model.egg-info/dependency_links.txt
biolink_model.egg-info/not-zip-safe
biolink_model.egg-info/pbr.json
biolink_model.egg-info/requires.txt
biolink_model.egg-info/top_level.txt
contrib/README.md
contrib/class_extensions.yaml
contrib/closures.yaml
contrib/core.yaml
contrib/go.yaml
contrib/monarch.yaml
contrib/taxon.yaml
contrib/translator.yaml
docs/ActivityAndBehavior.md
docs/AdministrativeEntity.md
docs/AnatomicalEntity.md
docs/AnatomicalEntityToAnatomicalEntityAssociation.md
docs/AnatomicalEntityToAnatomicalEntityOntogenicAssociation.md
docs/AnatomicalEntityToAnatomicalEntityPartOfAssociation.md
docs/Association.md
docs/Attribute.md
docs/BiologicalEntity.md
docs/BiologicalProcess.md
docs/BiologicalProcessOrActivity.md
docs/BiologicalSex.md
docs/Biosample.md
docs/BiosampleToDiseaseOrPhenotypicFeatureAssociation.md
docs/BiosampleToThingAssociation.md
docs/Carbohydrate.md
docs/Case.md
docs/CaseToPhenotypicFeatureAssociation.md
docs/CaseToThingAssociation.md
docs/Cell.md
docs/CellLine.md
docs/CellLineToDiseaseOrPhenotypicFeatureAssociation.md
docs/CellLineToThingAssociation.md
docs/CellularComponent.md
docs/ChemicalSubstance.md
docs/ChemicalToDiseaseOrPhenotypicFeatureAssociation.md
docs/ChemicalToGeneAssociation.md
docs/ChemicalToPathwayAssociation.md
docs/ChemicalToThingAssociation.md
docs/ClinicalEntity.md
docs/ClinicalIntervention.md
docs/ClinicalModifier.md
docs/ClinicalTrial.md
docs/CodingSequence.md
docs/ConfidenceLevel.md
docs/DataFile.md
docs/DataSet.md
docs/DataSetSummary.md
docs/DataSetVersion.md
docs/Device.md
docs/Disease.md
docs/DiseaseOrPhenotypicFeature.md
docs/DiseaseOrPhenotypicFeatureAssociationToLocationAssociation.md
docs/DiseaseOrPhenotypicFeatureAssociationToThingAssociation.md
docs/DiseaseToPhenotypicFeatureAssociation.md
docs/DiseaseToThingAssociation.md
docs/DistributionLevel.md
docs/Drug.md
docs/DrugExposure.md
docs/EntityToDiseaseAssociation.md
docs/EntityToFeatureOrDiseaseQualifiers.md
docs/EntityToPhenotypicFeatureAssociation.md
docs/Environment.md
docs/EnvironmentToPhenotypicFeatureAssociation.md
docs/EnvironmentalFeature.md
docs/EnvironmentalProcess.md
docs/EvidenceType.md
docs/Exon.md
docs/ExonToTranscriptRelationship.md
docs/FrequencyQualifierMixin.md
docs/FrequencyQuantifier.md
docs/FrequencyValue.md
docs/FunctionalAssociation.md
docs/Gene.md
docs/GeneAsAModelOfDiseaseAssociation.md
docs/GeneFamily.md
docs/GeneGrouping.md
docs/GeneHasVariantThatContributesToDiseaseAssociation.md
docs/GeneOntologyClass.md
docs/GeneOrGeneProduct.md
docs/GeneProduct.md
docs/GeneProductIsoform.md
docs/GeneRegulatoryRelationship.md
docs/GeneToDiseaseAssociation.md
docs/GeneToExpressionSiteAssociation.md
docs/GeneToGeneAssociation.md
docs/GeneToGeneHomologyAssociation.md
docs/GeneToGeneProductRelationship.md
docs/GeneToGoTermAssociation.md
docs/GeneToPhenotypicFeatureAssociation.md
docs/GeneToThingAssociation.md
docs/Genome.md
docs/GenomicEntity.md
docs/GenomicSequenceLocalization.md
docs/Genotype.md
docs/GenotypeToGeneAssociation.md
docs/GenotypeToGenotypePartAssociation.md
docs/GenotypeToPhenotypicFeatureAssociation.md
docs/GenotypeToThingAssociation.md
docs/GenotypeToVariantAssociation.md
docs/GenotypicSex.md
docs/GeographicLocation.md
docs/GeographicLocationAtTime.md
docs/GrossAnatomicalStructure.md
docs/Haplotype.md
docs/IndividualOrganism.md
docs/InformationContentEntity.md
docs/LifeStage.md
docs/MacromolecularComplex.md
docs/MacromolecularMachine.md
docs/MacromolecularMachineToBiologicalProcessAssociation.md
docs/MacromolecularMachineToCellularComponentAssociation.md
docs/MacromolecularMachineToMolecularActivityAssociation.md
docs/Metabolite.md
docs/Microrna.md
docs/ModelToDiseaseMixin.md
docs/MolecularActivity.md
docs/MolecularEntity.md
docs/NamedThing.md
docs/NoncodingRnaProduct.md
docs/Occurrent.md
docs/Onset.md
docs/OntologyClass.md
docs/OrganismTaxon.md
docs/OrganismalEntity.md
docs/PairwiseGeneToGeneInteraction.md
docs/PairwiseInteractionAssociation.md
docs/PathognomonicityQuantifier.md
docs/Pathway.md
docs/Phenomenon.md
docs/PhenotypicFeature.md
docs/PhenotypicSex.md
docs/PhysiologicalProcess.md
docs/PlanetaryEntity.md
docs/PopulationOfIndividualOrganisms.md
docs/PopulationToPopulationAssociation.md
docs/Procedure.md
docs/Protein.md
docs/ProteinIsoform.md
docs/Provider.md
docs/Publication.md
docs/RelationshipQuantifier.md
docs/RelationshipType.md
docs/RnaProduct.md
docs/RnaProductIsoform.md
docs/SensitivityQuantifier.md
docs/SequenceFeatureRelationship.md
docs/SequenceVariant.md
docs/SequenceVariantModulatesTreatmentAssociation.md
docs/SeverityValue.md
docs/SourceFile.md
docs/SpecificityQuantifier.md
docs/ThingToDiseaseOrPhenotypicFeatureAssociation.md
docs/ThingWithTaxon.md
docs/Transcript.md
docs/TranscriptToGeneRelationship.md
docs/Treatment.md
docs/VariantToDiseaseAssociation.md
docs/VariantToPhenotypicFeatureAssociation.md
docs/VariantToPopulationAssociation.md
docs/VariantToThingAssociation.md
docs/Zygosity.md
docs/actively_involved_in.md
docs/affects.md
docs/affects_abundance_of.md
docs/affects_activity_of.md
docs/affects_degradation_of.md
docs/affects_expression_of.md
docs/affects_folding_of.md
docs/affects_localization_of.md
docs/affects_metabolic_processing_of.md
docs/affects_molecular_modification_of.md
docs/affects_mutation_rate_of.md
docs/affects_response_to.md
docs/affects_risk_for.md
docs/affects_secretion_of.md
docs/affects_splicing_of.md
docs/affects_stability_of.md
docs/affects_synthesis_of.md
docs/affects_transport_of.md
docs/affects_uptake_of.md
docs/aggregate_statistic.md
docs/anatomical_entity_to_anatomical_entity_association_object.md
docs/anatomical_entity_to_anatomical_entity_association_subject.md
docs/anatomical_entity_to_anatomical_entity_ontogenic_association_object.md
docs/anatomical_entity_to_anatomical_entity_ontogenic_association_relation.md
docs/anatomical_entity_to_anatomical_entity_ontogenic_association_subject.md
docs/anatomical_entity_to_anatomical_entity_part_of_association_object.md
docs/anatomical_entity_to_anatomical_entity_part_of_association_relation.md
docs/anatomical_entity_to_anatomical_entity_part_of_association_subject.md
docs/association_id.md
docs/association_slot.md
docs/association_type.md
docs/biomarker_for.md
docs/biosample_to_thing_association_subject.md
docs/capable_of.md
docs/case_to_thing_association_subject.md
docs/category.md
docs/causes.md
docs/cell_line_to_disease_or_phenotypic_feature_association_subject.md
docs/cell_line_to_thing_association_subject.md
docs/chemical_to_disease_or_phenotypic_feature_association_object.md
docs/chemical_to_gene_association_object.md
docs/chemical_to_pathway_association_object.md
docs/chemical_to_thing_association_subject.md
docs/clinical_modifier_qualifier.md
docs/coexists_with.md
docs/colocalizes_with.md
docs/contributes_to.md
docs/correlated_with.md
docs/creation_date.md
docs/decreases_abundance_of.md
docs/decreases_activity_of.md
docs/decreases_degradation_of.md
docs/decreases_expression_of.md
docs/decreases_folding_of.md
docs/decreases_localization_of.md
docs/decreases_metabolic_processing_of.md
docs/decreases_molecular_modification_of.md
docs/decreases_mutation_rate_of.md
docs/decreases_response_to.md
docs/decreases_secretion_of.md
docs/decreases_splicing_of.md
docs/decreases_stability_of.md
docs/decreases_synthesis_of.md
docs/decreases_transport_of.md
docs/decreases_uptake_of.md
docs/derives_from.md
docs/derives_into.md
docs/description.md
docs/disease_or_phenotypic_feature_association_to_location_association_object.md
docs/disease_or_phenotypic_feature_association_to_thing_association_subject.md
docs/disease_to_thing_association_subject.md
docs/disrupts.md
docs/distribution.md
docs/downloadURL.md
docs/edge_label.md
docs/end_interbase_coordinate.md
docs/entity_to_disease_association_object.md
docs/entity_to_phenotypic_feature_association_description.md
docs/entity_to_phenotypic_feature_association_object.md
docs/environment_to_phenotypic_feature_association_subject.md
docs/exon_to_transcript_relationship_object.md
docs/exon_to_transcript_relationship_subject.md
docs/expressed_in.md
docs/expresses.md
docs/filler.md
docs/frequency_qualifier.md
docs/full_name.md
docs/functional_association_object.md
docs/functional_association_subject.md
docs/gene_as_a_model_of_disease_association_subject.md
docs/gene_associated_with_condition.md
docs/gene_has_variant_that_contributes_to_disease_association_subject.md
docs/gene_regulatory_relationship_object.md
docs/gene_regulatory_relationship_relation.md
docs/gene_regulatory_relationship_subject.md
docs/gene_to_disease_association_subject.md
docs/gene_to_expression_site_association_object.md
docs/gene_to_expression_site_association_quantifier_qualifier.md
docs/gene_to_expression_site_association_relation.md
docs/gene_to_expression_site_association_stage_qualifier.md
docs/gene_to_expression_site_association_subject.md
docs/gene_to_gene_association_object.md
docs/gene_to_gene_association_subject.md
docs/gene_to_gene_homology_association_relation.md
docs/gene_to_gene_product_relationship_object.md
docs/gene_to_gene_product_relationship_relation.md
docs/gene_to_gene_product_relationship_subject.md
docs/gene_to_go_term_association_object.md
docs/gene_to_go_term_association_subject.md
docs/gene_to_phenotypic_feature_association_subject.md
docs/gene_to_thing_association_subject.md
docs/genetically_interacts_with.md
docs/genome_build.md
docs/genomic_sequence_localization_object.md
docs/genomic_sequence_localization_subject.md
docs/genotype_to_gene_association_object.md
docs/genotype_to_gene_association_relation.md
docs/genotype_to_gene_association_subject.md
docs/genotype_to_genotype_part_association_object.md
docs/genotype_to_genotype_part_association_relation.md
docs/genotype_to_genotype_part_association_subject.md
docs/genotype_to_phenotypic_feature_association_relation.md
docs/genotype_to_phenotypic_feature_association_subject.md
docs/genotype_to_thing_association_subject.md
docs/genotype_to_variant_association_object.md
docs/genotype_to_variant_association_relation.md
docs/genotype_to_variant_association_subject.md
docs/has_biological_sequence.md
docs/has_biomarker.md
docs/has_chemical_formula.md
docs/has_confidence_level.md
docs/has_count.md
docs/has_evidence.md
docs/has_exposure_parts.md
docs/has_gene_product.md
docs/has_input.md
docs/has_molecular_consequence.md
docs/has_part.md
docs/has_participant.md
docs/has_percentage.md
docs/has_phenotype.md
docs/has_quotient.md
docs/has_total.md
docs/has_zygosity.md
docs/homologous_to.md
docs/id.md
docs/in_cell_population_with.md
docs/in_complex_with.md
docs/in_pathway_with.md
docs/in_taxon.md
docs/increases_abundance_of.md
docs/increases_activity_of.md
docs/increases_degradation_of.md
docs/increases_expression_of.md
docs/increases_folding_of.md
docs/increases_localization_of.md
docs/increases_metabolic_processing_of.md
docs/increases_molecular_modification_of.md
docs/increases_mutation_rate_of.md
docs/increases_response_to.md
docs/increases_secretion_of.md
docs/increases_splicing_of.md
docs/increases_stability_of.md
docs/increases_synthesis_of.md
docs/increases_transport_of.md
docs/increases_uptake_of.md
docs/index.md
docs/interacting_molecules_category.md
docs/interacts_with.md
docs/interbase_coordinate.md
docs/iri.md
docs/latitude.md
docs/located_in.md
docs/location_of.md
docs/longitude.md
docs/macromolecular_machine_name.md
docs/macromolecular_machine_to_biological_process_association_object.md
docs/macromolecular_machine_to_cellular_component_association_object.md
docs/macromolecular_machine_to_molecular_activity_association_object.md
docs/manifestation_of.md
docs/model_of.md
docs/model_to_disease_mixin_relation.md
docs/model_to_disease_mixin_subject.md
docs/molecularly_interacts_with.md
docs/name.md
docs/negated.md
docs/negatively_regulates.md
docs/negatively_regulates_entity_to_entity.md
docs/negatively_regulates_process_to_process.md
docs/node_property.md
docs/object.md
docs/occurs_in.md
docs/onset_qualifier.md
docs/orthologous_to.md
docs/overlaps.md
docs/pairwise_gene_to_gene_interaction_relation.md
docs/pairwise_interaction_association_id.md
docs/pairwise_interaction_association_object.md
docs/pairwise_interaction_association_relation.md
docs/pairwise_interaction_association_subject.md
docs/paralogous_to.md
docs/part_of.md
docs/participates_in.md
docs/phase.md
docs/physically_interacts_with.md
docs/population_to_population_association_object.md
docs/population_to_population_association_relation.md
docs/population_to_population_association_subject.md
docs/positively_regulates.md
docs/positively_regulates_entity_to_entity.md
docs/positively_regulates_process_to_process.md
docs/precedes.md
docs/predisposes.md
docs/prevents.md
docs/produces.md
docs/provided_by.md
docs/publications.md
docs/qualifiers.md
docs/regulates.md
docs/regulates_entity_to_entity.md
docs/regulates_process_to_process.md
docs/related_to.md
docs/relation.md
docs/retrievedOn.md
docs/same_as.md
docs/sequence_feature_relationship_object.md
docs/sequence_feature_relationship_subject.md
docs/sequence_variant_has_biological_sequence.md
docs/sequence_variant_has_gene.md
docs/sequence_variant_id.md
docs/sequence_variant_modulates_treatment_association_object.md
docs/sequence_variant_modulates_treatment_association_subject.md
docs/sequence_variant_qualifier.md
docs/severity_qualifier.md
docs/sex_qualifier.md
docs/source_data_file.md
docs/source_version.md
docs/source_web_page.md
docs/start_interbase_coordinate.md
docs/subclass_of.md
docs/subject.md
docs/synonym.md
docs/systematic_synonym.md
docs/thing_to_disease_or_phenotypic_feature_association_object.md
docs/timepoint.md
docs/title.md
docs/transcript_to_gene_relationship_object.md
docs/transcript_to_gene_relationship_subject.md
docs/treated_by.md
docs/treats.md
docs/type.md
docs/update_date.md
docs/variant_to_disease_association_object.md
docs/variant_to_disease_association_relation.md
docs/variant_to_disease_association_subject.md
docs/variant_to_phenotypic_feature_association_subject.md
docs/variant_to_population_association_has_count.md
docs/variant_to_population_association_has_quotient.md
docs/variant_to_population_association_has_total.md
docs/variant_to_population_association_object.md
docs/variant_to_population_association_subject.md
docs/variant_to_thing_association_subject.md
docs/versionOf.md
docs/xenologous_to.md
docs/images/ActivityAndBehavior.png
docs/images/AdministrativeEntity.png
docs/images/AnatomicalEntity.png
docs/images/AnatomicalEntityToAnatomicalEntityAssociation.png
docs/images/AnatomicalEntityToAnatomicalEntityOntogenicAssociation.png
docs/images/AnatomicalEntityToAnatomicalEntityPartOfAssociation.png
docs/images/Association.png
docs/images/Attribute.png
docs/images/BiologicalEntity.png
docs/images/BiologicalProcess.png
docs/images/BiologicalProcessOrActivity.png
docs/images/BiologicalSex.png
docs/images/Biosample.png
docs/images/BiosampleToDiseaseOrPhenotypicFeatureAssociation.png
docs/images/BiosampleToThingAssociation.png
docs/images/Carbohydrate.png
docs/images/Case.png
docs/images/CaseToPhenotypicFeatureAssociation.png
docs/images/CaseToThingAssociation.png
docs/images/Cell.png
docs/images/CellLine.png
docs/images/CellLineToDiseaseOrPhenotypicFeatureAssociation.png
docs/images/CellLineToThingAssociation.png
docs/images/CellularComponent.png
docs/images/ChemicalSubstance.png
docs/images/ChemicalToDiseaseOrPhenotypicFeatureAssociation.png
docs/images/ChemicalToGeneAssociation.png
docs/images/ChemicalToPathwayAssociation.png
docs/images/ChemicalToThingAssociation.png
docs/images/ClinicalEntity.png
docs/images/ClinicalIntervention.png
docs/images/ClinicalModifier.png
docs/images/ClinicalTrial.png
docs/images/CodingSequence.png
docs/images/ConfidenceLevel.png
docs/images/DataFile.png
docs/images/DataSet.png
docs/images/DataSetSummary.png
docs/images/DataSetVersion.png
docs/images/Device.png
docs/images/Disease.png
docs/images/DiseaseOrPhenotypicFeature.png
docs/images/DiseaseOrPhenotypicFeatureAssociationToLocationAssociation.png
docs/images/DiseaseOrPhenotypicFeatureAssociationToThingAssociation.png
docs/images/DiseaseToPhenotypicFeatureAssociation.png
docs/images/DiseaseToThingAssociation.png
docs/images/DistributionLevel.png
docs/images/Drug.png
docs/images/DrugExposure.png
docs/images/EntityToDiseaseAssociation.png
docs/images/EntityToFeatureOrDiseaseQualifiers.png
docs/images/EntityToPhenotypicFeatureAssociation.png
docs/images/Environment.png
docs/images/EnvironmentToPhenotypicFeatureAssociation.png
docs/images/EnvironmentalFeature.png
docs/images/EnvironmentalProcess.png
docs/images/EvidenceType.png
docs/images/Exon.png
docs/images/ExonToTranscriptRelationship.png
docs/images/FrequencyQualifierMixin.png
docs/images/FrequencyQuantifier.png
docs/images/FrequencyValue.png
docs/images/FunctionalAssociation.png
docs/images/Gene.png
docs/images/GeneAsAModelOfDiseaseAssociation.png
docs/images/GeneFamily.png
docs/images/GeneGrouping.png
docs/images/GeneHasVariantThatContributesToDiseaseAssociation.png
docs/images/GeneOntologyClass.png
docs/images/GeneOrGeneProduct.png
docs/images/GeneProduct.png
docs/images/GeneProductIsoform.png
docs/images/GeneRegulatoryRelationship.png
docs/images/GeneToDiseaseAssociation.png
docs/images/GeneToExpressionSiteAssociation.png
docs/images/GeneToGeneAssociation.png
docs/images/GeneToGeneHomologyAssociation.png
docs/images/GeneToGeneProductRelationship.png
docs/images/GeneToGoTermAssociation.png
docs/images/GeneToPhenotypicFeatureAssociation.png
docs/images/GeneToThingAssociation.png
docs/images/Genome.png
docs/images/GenomicEntity.png
docs/images/GenomicSequenceLocalization.png
docs/images/Genotype.png
docs/images/GenotypeToGeneAssociation.png
docs/images/GenotypeToGenotypePartAssociation.png
docs/images/GenotypeToPhenotypicFeatureAssociation.png
docs/images/GenotypeToThingAssociation.png
docs/images/GenotypeToVariantAssociation.png
docs/images/GenotypicSex.png
docs/images/GeographicLocation.png
docs/images/GeographicLocationAtTime.png
docs/images/GrossAnatomicalStructure.png
docs/images/Haplotype.png
docs/images/IndividualOrganism.png
docs/images/InformationContentEntity.png
docs/images/LifeStage.png
docs/images/MacromolecularComplex.png
docs/images/MacromolecularMachine.png
docs/images/MacromolecularMachineToBiologicalProcessAssociation.png
docs/images/MacromolecularMachineToCellularComponentAssociation.png
docs/images/MacromolecularMachineToMolecularActivityAssociation.png
docs/images/Metabolite.png
docs/images/MicroRNA.png
docs/images/ModelToDiseaseMixin.png
docs/images/MolecularActivity.png
docs/images/MolecularEntity.png
docs/images/NamedThing.png
docs/images/NoncodingRNAProduct.png
docs/images/Occurrent.png
docs/images/Onset.png
docs/images/OntologyClass.png
docs/images/OrganismTaxon.png
docs/images/OrganismalEntity.png
docs/images/PairwiseGeneToGeneInteraction.png
docs/images/PairwiseInteractionAssociation.png
docs/images/PathognomonicityQuantifier.png
docs/images/Pathway.png
docs/images/Phenomenon.png
docs/images/PhenotypicFeature.png
docs/images/PhenotypicSex.png
docs/images/PhysiologicalProcess.png
docs/images/PlanetaryEntity.png
docs/images/PopulationOfIndividualOrganisms.png
docs/images/PopulationToPopulationAssociation.png
docs/images/Procedure.png
docs/images/Protein.png
docs/images/ProteinIsoform.png
docs/images/Provider.png
docs/images/Publication.png
docs/images/RNAProduct.png
docs/images/RNAProductIsoform.png
docs/images/RelationshipQuantifier.png
docs/images/RelationshipType.png
docs/images/SensitivityQuantifier.png
docs/images/SequenceFeatureRelationship.png
docs/images/SequenceVariant.png
docs/images/SequenceVariantModulatesTreatmentAssociation.png
docs/images/SeverityValue.png
docs/images/SourceFile.png
docs/images/SpecificityQuantifier.png
docs/images/ThingToDiseaseOrPhenotypicFeatureAssociation.png
docs/images/ThingWithTaxon.png
docs/images/Transcript.png
docs/images/TranscriptToGeneRelationship.png
docs/images/Treatment.png
docs/images/VariantToDiseaseAssociation.png
docs/images/VariantToPhenotypicFeatureAssociation.png
docs/images/VariantToPopulationAssociation.png
docs/images/VariantToThingAssociation.png
docs/images/Zygosity.png
golr-views/RNA_product-config.yaml
golr-views/RNA_product_isoform-config.yaml
golr-views/activity_and_behavior-config.yaml
golr-views/anatomical_entity-config.yaml
golr-views/anatomical_entity_to_anatomical_entity_association-config.yaml
golr-views/anatomical_entity_to_anatomical_entity_ontogenic_association-config.yaml
golr-views/anatomical_entity_to_anatomical_entity_part_of_association-config.yaml
golr-views/association-config.yaml
golr-views/attribute-config.yaml
golr-views/biological_process-config.yaml
golr-views/biological_process_or_activity-config.yaml
golr-views/biological_sex-config.yaml
golr-views/biosample-config.yaml
golr-views/biosample_to_disease_or_phenotypic_feature_association-config.yaml
golr-views/carbohydrate-config.yaml
golr-views/case-config.yaml
golr-views/case_to_phenotypic_feature_association-config.yaml
golr-views/cell-config.yaml
golr-views/cell_line-config.yaml
golr-views/cell_line_to_disease_or_phenotypic_feature_association-config.yaml
golr-views/cellular_component-config.yaml
golr-views/chemical_substance-config.yaml
golr-views/chemical_to_disease_or_phenotypic_feature_association-config.yaml
golr-views/chemical_to_gene_association-config.yaml
golr-views/chemical_to_pathway_association-config.yaml
golr-views/clinical_entity-config.yaml
golr-views/clinical_intervention-config.yaml
golr-views/clinical_modifier-config.yaml
golr-views/clinical_trial-config.yaml
golr-views/coding_sequence-config.yaml
golr-views/confidence_level-config.yaml
golr-views/data_file-config.yaml
golr-views/data_set-config.yaml
golr-views/data_set_summary-config.yaml
golr-views/data_set_version-config.yaml
golr-views/device-config.yaml
golr-views/disease-config.yaml
golr-views/disease_or_phenotypic_feature-config.yaml
golr-views/disease_or_phenotypic_feature_association_to_location_association-config.yaml
golr-views/disease_to_phenotypic_feature_association-config.yaml
golr-views/distribution_level-config.yaml
golr-views/drug-config.yaml
golr-views/drug_exposure-config.yaml
golr-views/environment-config.yaml
golr-views/environment_to_phenotypic_feature_association-config.yaml
golr-views/environmental_feature-config.yaml
golr-views/environmental_process-config.yaml
golr-views/evidence_type-config.yaml
golr-views/exon-config.yaml
golr-views/exon_to_transcript_relationship-config.yaml
golr-views/frequency_qualifier_mixin-config.yaml
golr-views/frequency_quantifier-config.yaml
golr-views/frequency_value-config.yaml
golr-views/functional_association-config.yaml
golr-views/gene-config.yaml
golr-views/gene_as_a_model_of_disease_association-config.yaml
golr-views/gene_family-config.yaml
golr-views/gene_has_variant_that_contributes_to_disease_association-config.yaml
golr-views/gene_ontology_class-config.yaml
golr-views/gene_or_gene_product-config.yaml
golr-views/gene_product-config.yaml
golr-views/gene_regulatory_relationship-config.yaml
golr-views/gene_to_disease_association-config.yaml
golr-views/gene_to_expression_site_association-config.yaml
golr-views/gene_to_gene_homology_association-config.yaml
golr-views/gene_to_gene_product_relationship-config.yaml
golr-views/gene_to_go_term_association-config.yaml
golr-views/gene_to_phenotypic_feature_association-config.yaml
golr-views/genome-config.yaml
golr-views/genomic_entity-config.yaml
golr-views/genomic_sequence_localization-config.yaml
golr-views/genotype-config.yaml
golr-views/genotype_to_gene_association-config.yaml
golr-views/genotype_to_genotype_part_association-config.yaml
golr-views/genotype_to_phenotypic_feature_association-config.yaml
golr-views/genotype_to_variant_association-config.yaml
golr-views/genotypic_sex-config.yaml
golr-views/geographic_location-config.yaml
golr-views/geographic_location_at_time-config.yaml
golr-views/gross_anatomical_structure-config.yaml
golr-views/haplotype-config.yaml
golr-views/individual_organism-config.yaml
golr-views/life_stage-config.yaml
golr-views/macromolecular_complex-config.yaml
golr-views/macromolecular_machine-config.yaml
golr-views/macromolecular_machine_to_biological_process_association-config.yaml
golr-views/macromolecular_machine_to_cellular_component_association-config.yaml
golr-views/macromolecular_machine_to_molecular_activity_association-config.yaml
golr-views/metabolite-config.yaml
golr-views/microRNA-config.yaml
golr-views/molecular_activity-config.yaml
golr-views/molecular_entity-config.yaml
golr-views/named_thing-config.yaml
golr-views/noncoding_RNA_product-config.yaml
golr-views/occurrent-config.yaml
golr-views/onset-config.yaml
golr-views/ontology_class-config.yaml
golr-views/organism_taxon-config.yaml
golr-views/pairwise_gene_to_gene_interaction-config.yaml
golr-views/pathognomonicity_quantifier-config.yaml
golr-views/pathway-config.yaml
golr-views/phenomenon-config.yaml
golr-views/phenotypic_feature-config.yaml
golr-views/phenotypic_sex-config.yaml
golr-views/physiological_process-config.yaml
golr-views/planetary_entity-config.yaml
golr-views/population_of_individual_organisms-config.yaml
golr-views/population_to_population_association-config.yaml
golr-views/procedure-config.yaml
golr-views/protein-config.yaml
golr-views/protein_isoform-config.yaml
golr-views/provider-config.yaml
golr-views/publication-config.yaml
golr-views/relationship_type-config.yaml
golr-views/sensitivity_quantifier-config.yaml
golr-views/sequence_feature_relationship-config.yaml
golr-views/sequence_variant-config.yaml
golr-views/severity_value-config.yaml
golr-views/source_file-config.yaml
golr-views/specificity_quantifier-config.yaml
golr-views/transcript-config.yaml
golr-views/transcript_to_gene_relationship-config.yaml
golr-views/treatment-config.yaml
golr-views/variant_to_disease_association-config.yaml
golr-views/variant_to_phenotypic_feature_association-config.yaml
golr-views/variant_to_population_association-config.yaml
golr-views/zygosity-config.yaml
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graphviz/distribution_level.gv
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graphviz/drug.gv
graphviz/drug.svg
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graphviz/entity_to_disease_association.gv
graphviz/entity_to_disease_association.svg
graphviz/entity_to_feature_or_disease_qualifiers.gv
graphviz/entity_to_feature_or_disease_qualifiers.svg
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graphviz/frequency_qualifier_mixin.gv
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graphviz/functional_association.gv
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graphviz/gene.gv
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graphviz/gene_as_a_model_of_disease_association.gv
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graphviz/gene_family.gv
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graphviz/gene_grouping.gv
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graphviz/gene_has_variant_that_contributes_to_disease_association.gv
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graphviz/gene_ontology_class.gv
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graphviz/gene_regulatory_relationship.svg
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graphviz/gene_to_phenotypic_feature_association.gv
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graphviz/genome.gv
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graphviz/genomic_entity.gv
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graphviz/genomic_sequence_localization.gv
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graphviz/genotypic_sex.gv
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graphviz/microRNA.gv
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graphviz/sequence_variant_modulates_treatment_association.gv
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graphviz/variant_to_thing_association.svg
graphviz/zygosity.gv
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images/biolink-logo.png
images/protege-entities.png
java/ActivityAndBehavior.java
java/AnatomicalEntity.java
java/AnatomicalEntityToAnatomicalEntityAssociation.java
java/AnatomicalEntityToAnatomicalEntityOntogenicAssociation.java
java/AnatomicalEntityToAnatomicalEntityPartOfAssociation.java
java/Association.java
java/Attribute.java
java/BiolinkModel.java
java/BiologicalProcess.java
java/BiologicalProcessOrActivity.java
java/BiologicalSex.java
java/Biosample.java
java/BiosampleToDiseaseOrPhenotypicFeatureAssociation.java
java/Carbohydrate.java
java/Case.java
java/CaseToPhenotypicFeatureAssociation.java
java/Cell.java
java/CellLine.java
java/CellLineToDiseaseOrPhenotypicFeatureAssociation.java
java/CellularComponent.java
java/ChemicalSubstance.java
java/ChemicalToDiseaseOrPhenotypicFeatureAssociation.java
java/ChemicalToGeneAssociation.java
java/ChemicalToPathwayAssociation.java
java/ClinicalEntity.java
java/ClinicalIntervention.java
java/ClinicalModifier.java
java/ClinicalTrial.java
java/CodingSequence.java
java/ConfidenceLevel.java
java/DataFile.java
java/DataSet.java
java/DataSetSummary.java
java/DataSetVersion.java
java/Device.java
java/Disease.java
java/DiseaseOrPhenotypicFeature.java
java/DiseaseOrPhenotypicFeatureAssociationToLocationAssociation.java
java/DiseaseToPhenotypicFeatureAssociation.java
java/DistributionLevel.java
java/Drug.java
java/DrugExposure.java
java/Environment.java
java/EnvironmentToPhenotypicFeatureAssociation.java
java/EnvironmentalFeature.java
java/EnvironmentalProcess.java
java/EvidenceType.java
java/Exon.java
java/ExonToTranscriptRelationship.java
java/FrequencyQualifierMixin.java
java/FrequencyQuantifier.java
java/FrequencyValue.java
java/FunctionalAssociation.java
java/Gene.java
java/GeneAsAModelOfDiseaseAssociation.java
java/GeneFamily.java
java/GeneHasVariantThatContributesToDiseaseAssociation.java
java/GeneOntologyClass.java
java/GeneOrGeneProduct.java
java/GeneProduct.java
java/GeneRegulatoryRelationship.java
java/GeneToDiseaseAssociation.java
java/GeneToExpressionSiteAssociation.java
java/GeneToGeneHomologyAssociation.java
java/GeneToGeneProductRelationship.java
java/GeneToGoTermAssociation.java
java/GeneToPhenotypicFeatureAssociation.java
java/Genome.java
java/GenomicEntity.java
java/GenomicSequenceLocalization.java
java/Genotype.java
java/GenotypeToGeneAssociation.java
java/GenotypeToGenotypePartAssociation.java
java/GenotypeToPhenotypicFeatureAssociation.java
java/GenotypeToVariantAssociation.java
java/GenotypicSex.java
java/GeographicLocation.java
java/GeographicLocationAtTime.java
java/GrossAnatomicalStructure.java
java/Haplotype.java
java/IndividualOrganism.java
java/LifeStage.java
java/MacromolecularComplex.java
java/MacromolecularMachine.java
java/MacromolecularMachineToBiologicalProcessAssociation.java
java/MacromolecularMachineToCellularComponentAssociation.java
java/MacromolecularMachineToMolecularActivityAssociation.java
java/Metabolite.java
java/MicroRNA.java
java/MolecularActivity.java
java/MolecularEntity.java
java/NamedThing.java
java/NoncodingRNAProduct.java
java/Occurrent.java
java/Onset.java
java/OntologyClass.java
java/OrganismTaxon.java
java/PairwiseGeneToGeneInteraction.java
java/PathognomonicityQuantifier.java
java/Pathway.java
java/Phenomenon.java
java/PhenotypicFeature.java
java/PhenotypicSex.java
java/PhysiologicalProcess.java
java/PlanetaryEntity.java
java/PopulationOfIndividualOrganisms.java
java/PopulationToPopulationAssociation.java
java/Procedure.java
java/Protein.java
java/ProteinIsoform.java
java/Provider.java
java/Publication.java
java/RNAProduct.java
java/RNAProductIsoform.java
java/RelationshipType.java
java/SensitivityQuantifier.java
java/SequenceFeatureRelationship.java
java/SequenceVariant.java
java/SeverityValue.java
java/SourceFile.java
java/SpecificityQuantifier.java
java/Transcript.java
java/TranscriptToGeneRelationship.java
java/Treatment.java
java/VariantToDiseaseAssociation.java
java/VariantToPhenotypicFeatureAssociation.java
java/VariantToPopulationAssociation.java
java/Zygosity.java
json-schema/biolink-model.json
notebooks/loader_test.ipynb
notebooks/schemaloader.ipynb
script/bootstrap
tests/__init__.py
tests/biolink-model.yaml
tests/test_biolink_model.py
tests/test_pythongen.py
tests/biolink/__init__.py
tests/biolink/model.py