Metadata-Version: 2.1
Name: Meth5py
Version: 0.4.0
Summary: A class for converting BSMAPz methratio output into a fast and compressed hdf5 format
Home-page: https://github.com/zyndagj/Meth5py
Author: Greg Zynda
Author-email: zyndagj@gmail.com
License: BSD
Description: Meth5py
        ==========
        
        This will parse output from
        
        * [BSMAP's](https://sites.google.com/a/brown.edu/bioinformatics-in-biomed/bsmap-for-methylation) methratio.py
        * [BSMAPz's](https://github.com/zyndagj/BSMAPz) methratio.py
        
        and make a sparse, compressed hdf5 representation for fast queries based on position.
        Indexing is 1-based and follows the same conventions as samtools's faidx.
        
        Installation
        ------------
        
        Test the package
        
        ```
        python setup.py test
        ```
        
        then install it into the system package location
        
        ```
        pip install .
        ```
        
        or, your local path
        
        ```
        pip install --user .
        ```
        
        Usage
        -------------
        
        ```python
        from Meth5py import Meth5py
        m5 = Meth5py('tests/test_meth.txt', 'tests/test.fa')
        for record in m5.fetch('Chr1',10,11):
        	print(record)
        m5.close()
        ```
        
        Documentation
        -------------
        
        Documentation can be found [here](Documentation.md)
        
Platform: UNKNOWN
Classifier: License :: OSI Approved :: BSD License
Requires: h5py
Requires: numpy
Description-Content-Type: text/markdown
