Metadata-Version: 2.1
Name: NanoCount
Version: 0.2.0
Summary: EM based transcripts abundance estimation from nanopore reads mapped to a transcriptome with minimap2
Home-page: https://github.com/a-slide/NanoCount
Author: Adrien Leger
Author-email: aleg@ebi.ac.uk
License: MIT
Description: ![NanoCount](./docs/pictures/NanoCount.png)
        
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        [![PyPI downloads](https://pepy.tech/badge/NanoCount)](https://pepy.tech/project/NanoCount)
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        ---
        
        **NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads**
        
        ---
        
        **Documentation is available at https://a-slide.github.io/NanoCount/**
        
        ---
        
        Please be aware that `NanoCount` is a research package that is still under development.
        The API, command line interface, and implementation might change without retro-compatibility.
        
        
        ### Citing
        
        The repository is archived at Zenodo. If you use `NanoCount` please cite as follow:
        
        Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004
        
        ### Authors and contributors
        
        * Adrien Leger (@a-slide) - aleg {at} ebi.ac.uk
        
        The package was strongly inspired from https://github.com/jts/nanopore-rna-analysis by Jared Simpson
        
        * Jared Simpson (@jts)
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.6
Description-Content-Type: text/markdown
