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AUTHORS.rst
CONTRIBUTING.rst
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README.rst
TODO.md
deploy_docs.sh
requirements.txt
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setup.cfg
setup.py
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annotation/hg38/cds.bed.gz
annotation/hg38/genes.bed.gz
annotation/hg38/hg38.chrom.sizes
annotation/hg38/start_codon.bed.gz
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annotation/hg38/utr3.bed.gz
annotation/hg38/utr5.bed.gz
annotation/mm10/cds.bed.gz
annotation/mm10/genes.bed.gz
annotation/mm10/mm10.chrom.sizes
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annotation/mm10/utr3.bed.gz
annotation/mm10/utr5.bed.gz
annotation/notebooks/gencode-regions-human.ipynb
annotation/notebooks/gencode-regions-mouse.ipynb
docs/Makefile
docs/api-usage.rst
docs/authors.rst
docs/cmd-manual.rst
docs/conf.py
docs/contributing.rst
docs/history.rst
docs/index.rst
docs/installation.rst
docs/make.bat
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docs/riboraptor.rst
docs/scores.rst
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docs/images/SRR5227306.png
docs/images/SRR5227306_metagene.png
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docs/images/SRR5227310_metagene.png
docs/images/SRR5227310_metagene_ascii.png
docs/images/SRR5227310_read_length_dist_ascii.png
docs/images/fragment_length_distribution_ideal.png
docs/images/fragment_length_distribution_rna.png
docs/images/gene_coverage_ENSG00000080824.png
notebooks/KStest.ipynb
notebooks/Ribo-Seq periodicity.ipynb
riboraptor/__init__.py
riboraptor/cli.py
riboraptor/coherence.py
riboraptor/count.py
riboraptor/customutils.py
riboraptor/dtw.py
riboraptor/fasta.py
riboraptor/genome.py
riboraptor/gtfutils.py
riboraptor/helpers.py
riboraptor/normalization.py
riboraptor/plotting.py
riboraptor/statistics.py
riboraptor/wig.py
riboraptor.egg-info/PKG-INFO
riboraptor.egg-info/SOURCES.txt
riboraptor.egg-info/dependency_links.txt
riboraptor.egg-info/entry_points.txt
riboraptor.egg-info/not-zip-safe
riboraptor.egg-info/requires.txt
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snakemake/Snakefile
snakemake/cluster.yaml
snakemake/jobscript.sh
snakemake/submitall.dryrun
snakemake/submitall.sh
tests/__init__.py
tests/test_riboraptor.py