CHANGELOG.md
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
src/napari_dmc_brainmap/__init__.py
src/napari_dmc_brainmap/_platform.py
src/napari_dmc_brainmap/napari.yaml
src/napari_dmc_brainmap.egg-info/PKG-INFO
src/napari_dmc_brainmap.egg-info/SOURCES.txt
src/napari_dmc_brainmap.egg-info/dependency_links.txt
src/napari_dmc_brainmap.egg-info/entry_points.txt
src/napari_dmc_brainmap.egg-info/requires.txt
src/napari_dmc_brainmap.egg-info/top_level.txt
src/napari_dmc_brainmap/padding/__init__.py
src/napari_dmc_brainmap/padding/padding.py
src/napari_dmc_brainmap/params/__init__.py
src/napari_dmc_brainmap/params/params.py
src/napari_dmc_brainmap/preprocessing/__init__.py
src/napari_dmc_brainmap/preprocessing/preprocessing.py
src/napari_dmc_brainmap/preprocessing/preprocessing_tools.py
src/napari_dmc_brainmap/registration/__init__.py
src/napari_dmc_brainmap/registration/registration.py
src/napari_dmc_brainmap/registration/sharpy_track/__init__.py
src/napari_dmc_brainmap/registration/sharpy_track/__main__.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/__init__.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/controller/__init__.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/controller/status.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/__init__.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/crosshair_red.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/crosshair_yellow.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/crosshair_yellow_0.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/crosshair_yellow_s.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/empty.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/error_red.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/keyboard_shortcuts.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/predict_disabled.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/images/predict_enabled.png
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/AtlasModel.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/HelperModel.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/MeasurementHandler.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/PandasModel.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/__init__.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/calculation.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/coordinates.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/model/prediction.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/AnchorRow.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/DotObject.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/GraphicViewers.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/MainWidget.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/MeasurementMarker.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/ModeToggle.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/QGraphicsViewerMT.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/RegistrationViewer.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/Tools.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/TreRow.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/ViewerGeneral.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/__init__.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/ui/AccuracyMeasurement.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/ui/__init__.py
src/napari_dmc_brainmap/registration/sharpy_track/sharpy_track/view/ui/accuracy_measurement_page.ui
src/napari_dmc_brainmap/results/__init__.py
src/napari_dmc_brainmap/results/results.py
src/napari_dmc_brainmap/results/probe_vis/__init__.py
src/napari_dmc_brainmap/results/probe_vis/__main__.py
src/napari_dmc_brainmap/results/probe_vis/probe_vis/__init__.py
src/napari_dmc_brainmap/results/probe_vis/probe_vis/view/MainWidget.py
src/napari_dmc_brainmap/results/probe_vis/probe_vis/view/ProbeVisualizer.py
src/napari_dmc_brainmap/results/probe_vis/probe_vis/view/QLabelMT.py
src/napari_dmc_brainmap/results/probe_vis/probe_vis/view/__init__.py
src/napari_dmc_brainmap/results/results_helpers/__init__.py
src/napari_dmc_brainmap/results/results_helpers/results_creator.py
src/napari_dmc_brainmap/results/results_helpers/results_quantifier.py
src/napari_dmc_brainmap/results/results_helpers/slice_handle.py
src/napari_dmc_brainmap/results/results_helpers/tract_calculator.py
src/napari_dmc_brainmap/segment/__init__.py
src/napari_dmc_brainmap/segment/segment.py
src/napari_dmc_brainmap/segment/processing/__init__.py
src/napari_dmc_brainmap/segment/processing/atlas_utils.py
src/napari_dmc_brainmap/segment/processing/centroid_finder.py
src/napari_dmc_brainmap/segment/processing/native_presegmentation.py
src/napari_dmc_brainmap/segment/processing/presegmentation_tools.py
src/napari_dmc_brainmap/stitching/__init__.py
src/napari_dmc_brainmap/stitching/layout.py
src/napari_dmc_brainmap/stitching/stitching.py
src/napari_dmc_brainmap/stitching/stitching_tools.py
src/napari_dmc_brainmap/stitching/tiff_output.py
src/napari_dmc_brainmap/utils/__init__.py
src/napari_dmc_brainmap/utils/atlas_cache.py
src/napari_dmc_brainmap/utils/atlas_utils.py
src/napari_dmc_brainmap/utils/cache_paths.py
src/napari_dmc_brainmap/utils/color_manager.py
src/napari_dmc_brainmap/utils/data_loader.py
src/napari_dmc_brainmap/utils/dataframe_utils.py
src/napari_dmc_brainmap/utils/dropdown_utils.py
src/napari_dmc_brainmap/utils/general_utils.py
src/napari_dmc_brainmap/utils/gui_utils.py
src/napari_dmc_brainmap/utils/params_utils.py
src/napari_dmc_brainmap/utils/path_utils.py
src/napari_dmc_brainmap/utils/xkcd.json
src/napari_dmc_brainmap/visualization/__init__.py
src/napari_dmc_brainmap/visualization/visualization.py
src/napari_dmc_brainmap/visualization/vis_plots/__init__.py
src/napari_dmc_brainmap/visualization/vis_plots/barplot_visualization.py
src/napari_dmc_brainmap/visualization/vis_plots/brainsection_plotter.py
src/napari_dmc_brainmap/visualization/vis_plots/brainsection_visualization.py
src/napari_dmc_brainmap/visualization/vis_plots/heatmap_visualization.py
src/napari_dmc_brainmap/visualization/vis_utils/__init__.py
src/napari_dmc_brainmap/visualization/vis_utils/gene_info_dialog.py
src/napari_dmc_brainmap/visualization/vis_utils/visualization_utils.py
test/test_atlas_cache.py
test/test_brainglobe_contract.py
test/test_dropdown_utils.py
test/test_gui_stack_compatibility.py
test/test_native_presegmentation.py
test/test_pandas_copy_semantics.py
test/test_platform_support.py
test/test_plotting_stack_compatibility.py
test/test_presegmentation_image_inputs.py
test/test_presegmentation_regression.py
test/test_probe_visualizer.py
test/test_registration_calculation.py
test/test_registration_coordinates.py
test/test_registration_matplotlib_compatibility.py
test/test_registration_prediction.py
test/test_scipy_sklearn_compatibility.py
test/test_slice_handle.py
test/test_stitching_layout.py
test/test_stitching_pipeline.py
test/test_stitching_tiff_output.py
test/test_tiff_stack_compatibility.py
test/test_tract_calculator.py
test/test_utils.py
test/test_visualization_utils.py