See here a more comprehensive report of MultiQC software
Mean per base sequence quality
Read 1
{% if paired_end %}Read 2
{% endif %}
#PF reads per sample
Flowcell Summary
| Clusters (Raw) | Clusters (PF) | Yield (MBases) |
| {{ flw_stats[feature] }} | {% endfor %}
Basic parameters per sample
| Sample | Index |
# PF Clusters
|
% Clusters per sample |
Yield (MBases) |
%≥Q30
|
FastQC Analysis | ||||
| {{ row[feature] }} | {% endfor %} {% for feature in right_project_features %}{{ row[feature] }} | {% endfor %} {% if undetermined %}{% if paired_end %} | {% endif %} {% else %} | {{ row['q30_pf_r1'] }} {% if paired_end %} (R1) {{ row['q30_pf_r2'] }} (R2){% endif %} | {%if undetermined %}{% else %} | 
|
{% endif %}
{%if undetermined %}
{% else %} {% if paired_end %} |
|
{% endif %}
{% endif %}
{% endif %} {% set bg0, bg1 = bg1, bg0 %}