LICENSE
MANIFEST.in
README.md
pyproject.toml
brucellaid/__init__.py
brucellaid/__main__.py
brucellaid/cli.py
brucellaid/errors.py
brucellaid/htmlreport.py
brucellaid/mash.py
brucellaid/mlst.py
brucellaid/pdfreport.py
brucellaid/pipeline.py
brucellaid/qa.py
brucellaid/references.py
brucellaid/report.py
brucellaid/samples.py
brucellaid/seal.py
brucellaid/species.py
brucellaid.egg-info/PKG-INFO
brucellaid.egg-info/SOURCES.txt
brucellaid.egg-info/dependency_links.txt
brucellaid.egg-info/entry_points.txt
brucellaid.egg-info/requires.txt
brucellaid.egg-info/top_level.txt
brucellaid/data/README.md
brucellaid/data/logo.png
brucellaid/data/logo.svg
brucellaid/data/mlst_alleles.fasta
brucellaid/data/mlst_profiles.tsv
brucellaid/data/mlst_st_species.tsv
brucellaid/data/references.msh
brucellaid/data/references.tsv
brucellaid/data/references_extended.msh
brucellaid/data/references_extended.tsv
tests/__init__.py
tests/conftest.py
tests/test_cli.py
tests/test_integration.py
tests/test_main_module.py
tests/test_mash.py
tests/test_mlst.py
tests/test_pipeline.py
tests/test_qa.py
tests/test_references.py
tests/test_report.py
tests/test_reports_qa.py
tests/test_samples.py
tests/test_seal.py
tests/test_species.py