Metadata-Version: 2.1
Name: bia-bob
Version: 0.1.0
Summary: A Jupyter-based assistant for working on bio-image analysis tasks
Home-page: https://github.com/haesleinhuepf/bia-bob
Author: Robert Haase
Author-email: robert.haase@tu-dresden.de
License: BSD-3-Clause
Project-URL: Bug Tracker, https://github.com/haesleinhuepf/bia-bob/issues
Project-URL: Documentation, https://github.com/haesleinhuepf/bia-bob#README.md
Project-URL: Source Code, https://github.com/haesleinhuepf/bia-bob
Project-URL: User Support, https://github.com/haesleinhuepf/bia-bob/issues
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering :: Image Processing
Requires-Python: >=3.8
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: python-Levenshtein (>=0.21.0)
Requires-Dist: scikit-image (>=0.19.0)
Requires-Dist: langchain (>=0.0.251)
Requires-Dist: stackview (>=0.6.3)
Provides-Extra: testing
Requires-Dist: tox ; extra == 'testing'
Requires-Dist: pytest ; extra == 'testing'
Requires-Dist: pytest-cov ; extra == 'testing'

# bia-bob

BIA Bob is a Jupyter-based assistant for interacting with image data and for working on Bio-image Analysis tasks.
It is based on [LangChain](https://python.langchain.com/docs/get_started/introduction.html) and [OpenAI's API](https://openai.com/blog/openai-api). You need an openai API account to use it.

Note: Bob is currently in an early alpha stage. It is not very smart yet. Feedback is very welcome!

## Usage

Detailed examples of how to interact with Bob are given in [this notebook](https://github.com/haesleinhuepf/bia-bob/blob/main/demo/basic_demo.ipynb)

```
from bia_bob import bob
```

![img.png](docs/images/load_and_show.png)

![img_1.png](docs/images/slice.png)

![img.png](docs/images/chain_workflows.png)

![img.png](docs/images/count_blobs.png)

## Known issues

If you want to ask Bob a question, you need to put a space before the `?`.

```
What do you know about blobs.gif?
```

## Installation

```
pip install bia-bob
```


## Issues

If you encounter any problems or want to provide feedback or suggestions, please create a thread on [image.sc](https://image.sc) along with a detailed description and tag [@haesleinhuepf].





