LICENSE
MANIFEST.in
README.rst
setup.py
bioscrape/__init__.py
bioscrape/analysis.py
bioscrape/inference.pxd
bioscrape/inference.pyx
bioscrape/inference_setup.py
bioscrape/pid_interfaces.py
bioscrape/random.pxd
bioscrape/random.pyx
bioscrape/sbmlutil.py
bioscrape/simulator.pxd
bioscrape/simulator.pyx
bioscrape/types.pxd
bioscrape/types.pyx
bioscrape/vector.pxd
bioscrape.egg-info/PKG-INFO
bioscrape.egg-info/SOURCES.txt
bioscrape.egg-info/dependency_links.txt
bioscrape.egg-info/not-zip-safe
bioscrape.egg-info/requires.txt
bioscrape.egg-info/top_level.txt
lineage/lineage.pxd
lineage/lineage.pyx
tests/How to write bioscrape tests.ipynb
tests/Likelihood and Data Objects.ipynb
tests/Saving and loading SBML and Bioscrape XML.ipynb
tests/dbg.txt
tests/debug_state.py
tests/test_inference.py
tests/test_initialize_model.py
tests/test_interfaces.py
tests/test_propensities_via_annotations.py
tests/test_randomized_delay.py
tests/test_randomized_propensity.py
tests/test_rules.py
tests/test_sbml_loading.py
tests/test_sensitivity_analysis.py
tests/test_serialization.py
tests/test_utils.py