Metadata-Version: 2.1
Name: PoseR-napari
Version: 0.0.1b3
Summary: A deep learning toolbox for decoding animal behaviour
Home-page: https://github.com/pnm4sfix/PoseR
Author: Pierce Mullen
Author-email: pnm1@st-andrews.ac.uk
License: BSD-3-Clause
Project-URL: Bug Tracker, https://github.com/pnm4sfix/PoseR/issues
Project-URL: Documentation, https://github.com/pnm4sfix/PoseR#README.md
Project-URL: Source Code, https://github.com/pnm4sfix/PoseR
Project-URL: User Support, https://github.com/pnm4sfix/PoseR/issues
Classifier: Development Status :: 2 - Pre-Alpha
Classifier: Framework :: napari
Classifier: Intended Audience :: Developers
Classifier: License :: OSI Approved :: BSD License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Topic :: Scientific/Engineering :: Image Processing
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: numpy
Requires-Dist: magicgui
Requires-Dist: qtpy
Requires-Dist: napari
Requires-Dist: napari-video
Requires-Dist: napari-plot
Requires-Dist: tables
Requires-Dist: imageio-ffmpeg (==0.4.8)
Requires-Dist: pytorch-lightning
Requires-Dist: test-tube
Requires-Dist: scikit-learn
Requires-Dist: matplotlib
Requires-Dist: numba
Requires-Dist: networkx
Requires-Dist: seaborn
Provides-Extra: testing
Requires-Dist: tox ; extra == 'testing'
Requires-Dist: pytest ; extra == 'testing'
Requires-Dist: pytest-cov ; extra == 'testing'
Requires-Dist: pytest-qt ; extra == 'testing'
Requires-Dist: napari ; extra == 'testing'
Requires-Dist: pyqt5 ; extra == 'testing'

# PoseR

[![License BSD-3](https://img.shields.io/pypi/l/PoseR.svg?color=green)](https://github.com/pnm4sfix/PoseR/raw/main/LICENSE)
[![PyPI](https://img.shields.io/pypi/v/PoseR-napari.svg?color=green)](https://pypi.org/project/PoseR-napari)
[![Python Version](https://img.shields.io/pypi/pyversions/PoseR-napari.svg?color=green)](https://python.org)
[![tests](https://github.com/pnm4sfix/PoseR/workflows/tests/badge.svg)](https://github.com/pnm4sfix/PoseR/actions)
[![codecov](https://codecov.io/gh/pnm4sfix/PoseR/branch/main/graph/badge.svg)](https://codecov.io/gh/pnm4sfix/PoseR)
[![napari hub](https://img.shields.io/endpoint?url=https://api.napari-hub.org/shields/PoseR)](https://napari-hub.org/plugins/PoseR)

A deep learning toolbox for decoding animal behaviour

----------------------------------

This [napari] plugin was generated with [Cookiecutter] using [@napari]'s [cookiecutter-napari-plugin] template.

<!--
Don't miss the full getting started guide to set up your new package:
https://github.com/napari/cookiecutter-napari-plugin#getting-started

and review the napari docs for plugin developers:
https://napari.org/stable/plugins/index.html
-->
![alt text](https://github.com/pnm4sfix/PoseR/blob/add-functionality/docs/logo.png?raw=true)

## Installation

Create an anaconda environment:

    conda create -n PoseR python=3.10

Activate PoseR environment:

    conda activate PoseR

Install CUDA if using NVIDIA GPU:

    conda install -c "nvidia/label/cuda-11.7.0" cuda

Install Pytorch:
For GPU:

    conda install pytorch torchvision torchaudio pytorch-cuda=11.7 -c pytorch -c nvidia

For CPU only version:

    conda install pytorch torchvision torchaudio cpuonly -c pytorch
    
Install napari:

    pip install napari["all"]

You can install `PoseR` via [pip]:

    pip install PoseR-napari



To install latest development version :

    pip install git+https://github.com/pnm4sfix/PoseR.git


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"PoseR" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/pnm4sfix/PoseR/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
