Metadata-Version: 2.2
Name: amiga
Version: 3.0.2
Summary: Analysis of Microbial Growth Assays
Author-email: Firas Midani <fsm.promotions@gmail.com>
License: GNU GPL v3.0
Project-URL: Homepage, https://github.com/firasmidani/amiga
Project-URL: Documentation, https://firasmidani.github.io/amiga/
Project-URL: Repository, https://github.com/firasmidani/amiga
Project-URL: Issues, https://github.com/firasmidani/amiga/issues
Requires-Python: <3.13.0,>=3.10.0
Description-Content-Type: text/markdown
License-File: LICENSE.md
Requires-Dist: cycler>=0.11.1
Requires-Dist: Cython>=3.0.0
Requires-Dist: decorator>=5.1.0
Requires-Dist: GPy>=1.10.0
Requires-Dist: kiwisolver>=1.3.2
Requires-Dist: matplotlib>=3.5.1
Requires-Dist: numpy>=1.21.0
Requires-Dist: pandas>=1.3.0
Requires-Dist: paramz>=0.9.5
Requires-Dist: pyparsing>=3.0.0
Requires-Dist: python-dateutil>=2.8.2
Requires-Dist: pytz>=2021.3
Requires-Dist: scipy>=1.8.0
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Requires-Dist: six>=1.16.0
Requires-Dist: tabulate>=0.8.8

# AMiGA

**A**nalysis of **Mi**crobial **G**rowth **A**ssays is a user-friendly program for analysis of high-throughput microbial growth assays using Gaussian Process regression. Users can interact with `AMiGA` via a command-line interface.

## Documentation:

See [documentation](https://firasmidani.github.io/amiga) for tutorials, technical details, and examples.

## Installation:

See [Installation](https://firasmidani.github.io/amiga/doc/installation.html) for instructions and requirements.

## License

This project is covered under the [GPL-3 license](https://www.gnu.org/licenses/gpl-3.0.en.html).

## Bugs/Feature Requests

Please post issues [here](https://github.com/firasmidani/amiga/issues).

## Manuscript and Citation

FS Midani, J Collins, and RA Britton.  
__AMiGA: software for automated analysis of microbial growth assays.__  
*mSystems* (2021). [https://doi.org/10.1128/mSystems.00508-21](https://doi.org/10.1128/mSystems.00508-21)  

To reproduce analysis and figures in the manuscript, see [Manuscript README](https://github.com/firasmidani/amiga/blob/master/examples/manuscript/README.md). 
