.gitignore
.travis.yml
LICENSE.txt
MANIFEST.in
README.md
install_genome.py
requirements.txt
setup.py
test.py
SigProfilerAssignment/Analyzer.py
SigProfilerAssignment/__init__.py
SigProfilerAssignment/decompose_subroutines.py
SigProfilerAssignment/decomposition.py
SigProfilerAssignment/single_sample.py
SigProfilerAssignment/version.py
SigProfilerAssignment.egg-info/PKG-INFO
SigProfilerAssignment.egg-info/SOURCES.txt
SigProfilerAssignment.egg-info/dependency_links.txt
SigProfilerAssignment.egg-info/not-zip-safe
SigProfilerAssignment.egg-info/requires.txt
SigProfilerAssignment.egg-info/top_level.txt
SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py
SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py
SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py
SigProfilerAssignment/DecompositionPlots/ExampleSample/CNV48_De-Novo_Signatures.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_CNV48_Signatures.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_DBS78_Signatures.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_ID83_Signatures.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/COSMIC_SBS288_Signatures.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_DINUC.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_INDEL.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS1536.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS288.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/De_Novo_Solution_Signatures_SBS96.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS1536.txt
SigProfilerAssignment/DecompositionPlots/ExampleSample/Decomposed_Solution_Signatures_SBS96.txt
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md
SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf
SigProfilerAssignment/data/21_breast_WGS_substitutions.mat
SigProfilerAssignment/data/CNV_features.tsv
SigProfilerAssignment/data/CNV_signatures.txt
SigProfilerAssignment/data/CN_classes_dictionary.txt
SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx
SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx
SigProfilerAssignment/data/Samples.txt
SigProfilerAssignment/data/csvexample.csv
SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv
SigProfilerAssignment/data/sigProfiler_ID_signatures.csv
SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv
SigProfilerAssignment/data/Examples/Input_scenario_8/Samples.txt
SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.catalog.csv
SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.exposures.csv
SigProfilerAssignment/data/Examples/Input_scenario_8/ground.truth.syn.sigs.csv
SigProfilerAssignment/data/Examples/Results_scenario_8/JOB_METADATA.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/Seeds.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_solutions_stat.csv
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/SBS96_selection_plot.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Samples.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activities_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_NMF_Activity_Plots.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Activities/SBS96_S1_TMB_NMF_plot.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/SBS96_S1_Signatures_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Signatures/Signature_plotSBS_96_plots_S1.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_NMF_Convergence_Information.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Samples_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_1_Signatures/Solution_Stats/SBS96_S1_Signatures_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activities_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_NMF_Activity_Plots.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Activities/SBS96_S2_TMB_NMF_plot.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/SBS96_S2_Signatures_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Signatures/Signature_plotSBS_96_plots_S2.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_NMF_Convergence_Information.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Samples_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_2_Signatures/Solution_Stats/SBS96_S2_Signatures_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activities_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_NMF_Activity_Plots.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Activities/SBS96_S3_TMB_NMF_plot.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/SBS96_S3_Signatures_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Signatures/Signature_plotSBS_96_plots_S3.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_NMF_Convergence_Information.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Samples_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_3_Signatures/Solution_Stats/SBS96_S3_Signatures_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activities_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_NMF_Activity_Plots.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Activities/SBS96_S4_TMB_NMF_plot.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/SBS96_S4_Signatures_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Signatures/Signature_plotSBS_96_plots_S4.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_NMF_Convergence_Information.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Samples_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_4_Signatures/Solution_Stats/SBS96_S4_Signatures_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activities_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_NMF_Activity_Plots.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Activities/SBS96_S5_TMB_NMF_plot.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/SBS96_S5_Signatures_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Signatures/Signature_plotSBS_96_plots_S5.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_NMF_Convergence_Information.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Samples_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_5_Signatures/Solution_Stats/SBS96_S5_Signatures_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activities_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_NMF_Activity_Plots.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Activities/SBS96_S6_TMB_NMF_plot.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/SBS96_S6_Signatures_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Signatures/Signature_plotSBS_96_plots_S6.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_NMF_Convergence_Information.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Samples_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/All_Solutions/SBS96_6_Signatures/Solution_Stats/SBS96_S6_Signatures_stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/De_Novo_map_to_COSMIC_SBS96.csv
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activities_refit.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_Activity_Plots_refit.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/COSMIC_SBS96_TMB_plot_refit.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Activities/Decomposed_Mutation_Probabilities.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/COSMIC_SBS96_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Signatures/SBS_96_plots_COSMIC_SBS96.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Samples_Stats_refit.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_Signature_Assignment_log.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/COSMIC_SBS96_refit_Signature_Assignment_log.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/Solution_Stats/Cosmic_SBS96_Decomposition_Log.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/De_Novo_Mutation_Probabilities_refit.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activities_refit.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_Activity_Plots_refit.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Activities/SBS96_De-Novo_TMB_plot_refit.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS96_De-Novo_Signatures_SEM_Error.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Signatures/SBS_96_plots_SBS96_De-Novo.pdf
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Samples_Stats_refit.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_Signatures_Stats.txt
SigProfilerAssignment/data/Examples/Results_scenario_8/SBS96/Suggested_Solution/SBS96_De-Novo_Solution/Solution_Stats/SBS96_De-Novo_refit_Signature_Assignment_log.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt
SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt
SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt
SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt
SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt
SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv
SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt
SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt
SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt
SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt
SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt
SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt
SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf
SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf
SigProfilerAssignment/figures/SigProfilerAssignment.png
SigProfilerAssignment/figures/cosmic_fit.jpg
SigProfilerAssignment/figures/cosmic_pic.jpg
SigProfilerAssignment/figures/decomp_pic.jpg
SigProfilerAssignment/figures/denovo_fit.jpg