.gitattributes
.gitignore
.readthedocs.yaml
LICENSE.txt
MANIFEST.in
README.md
pyproject.toml
sceptr.svg
tox.ini
.github/dependabot.yml
.github/workflows/publish_to_pypi.yaml
.github/workflows/tests.yaml
docs/Makefile
docs/api.rst
docs/citing.rst
docs/conf.py
docs/graphical_abstract.png
docs/index.rst
docs/installation.rst
docs/make.bat
docs/sceptr.rst
docs/sceptr_model.rst
docs/sceptr_variant.rst
docs/troubleshooting.rst
docs/usage.rst
docs/_static/css/colours.css
src/sceptr/__init__.py
src/sceptr/model.py
src/sceptr/variant.py
src/sceptr.egg-info/PKG-INFO
src/sceptr.egg-info/SOURCES.txt
src/sceptr.egg-info/dependency_links.txt
src/sceptr.egg-info/requires.txt
src/sceptr.egg-info/top_level.txt
src/sceptr/_model_saves/__init__.py
src/sceptr/_model_saves/A_SCEPTR/config.json
src/sceptr/_model_saves/A_SCEPTR/log.csv
src/sceptr/_model_saves/A_SCEPTR/state_dict.pt
src/sceptr/_model_saves/B_SCEPTR/config.json
src/sceptr/_model_saves/B_SCEPTR/log.csv
src/sceptr/_model_saves/B_SCEPTR/state_dict.pt
src/sceptr/_model_saves/SCEPTR/config.json
src/sceptr/_model_saves/SCEPTR/log.csv
src/sceptr/_model_saves/SCEPTR/state_dict.pt
src/sceptr/_model_saves/SCEPTR_BLOSUM/config.json
src/sceptr/_model_saves/SCEPTR_BLOSUM/log.csv
src/sceptr/_model_saves/SCEPTR_BLOSUM/state_dict.pt
src/sceptr/_model_saves/SCEPTR_CDR3_only/config.json
src/sceptr/_model_saves/SCEPTR_CDR3_only/log.csv
src/sceptr/_model_saves/SCEPTR_CDR3_only/state_dict.pt
src/sceptr/_model_saves/SCEPTR_CDR3_only_MLM_only/config.json
src/sceptr/_model_saves/SCEPTR_CDR3_only_MLM_only/log.csv
src/sceptr/_model_saves/SCEPTR_CDR3_only_MLM_only/state_dict.pt
src/sceptr/_model_saves/SCEPTR_MLM_only/config.json
src/sceptr/_model_saves/SCEPTR_MLM_only/log.csv
src/sceptr/_model_saves/SCEPTR_MLM_only/state_dict.pt
src/sceptr/_model_saves/SCEPTR_average_pooling/config.json
src/sceptr/_model_saves/SCEPTR_average_pooling/log.csv
src/sceptr/_model_saves/SCEPTR_average_pooling/state_dict.pt
src/sceptr/_model_saves/SCEPTR_dropout_noise_only/config.json
src/sceptr/_model_saves/SCEPTR_dropout_noise_only/log.csv
src/sceptr/_model_saves/SCEPTR_dropout_noise_only/state_dict.pt
src/sceptr/_model_saves/SCEPTR_finetuned/config.json
src/sceptr/_model_saves/SCEPTR_finetuned/log.csv
src/sceptr/_model_saves/SCEPTR_finetuned/state_dict.pt
src/sceptr/_model_saves/SCEPTR_large/config.json
src/sceptr/_model_saves/SCEPTR_large/log.csv
src/sceptr/_model_saves/SCEPTR_large/state_dict.pt
src/sceptr/_model_saves/SCEPTR_left_aligned/config.json
src/sceptr/_model_saves/SCEPTR_left_aligned/log.csv
src/sceptr/_model_saves/SCEPTR_left_aligned/state_dict.pt
src/sceptr/_model_saves/SCEPTR_shuffled_data/config.json
src/sceptr/_model_saves/SCEPTR_shuffled_data/log.csv
src/sceptr/_model_saves/SCEPTR_shuffled_data/state_dict.pt
src/sceptr/_model_saves/SCEPTR_small/config.json
src/sceptr/_model_saves/SCEPTR_small/log.csv
src/sceptr/_model_saves/SCEPTR_small/state_dict.pt
src/sceptr/_model_saves/SCEPTR_synthetic_data/config.json
src/sceptr/_model_saves/SCEPTR_synthetic_data/log.csv
src/sceptr/_model_saves/SCEPTR_synthetic_data/state_dict.pt
src/sceptr/_model_saves/SCEPTR_tiny/config.json
src/sceptr/_model_saves/SCEPTR_tiny/log.csv
src/sceptr/_model_saves/SCEPTR_tiny/state_dict.pt
tests/bad_cdr3a.csv
tests/bad_trav.csv
tests/mock_data.csv
tests/mock_data_musmusculus.csv
tests/test_errors.py
tests/test_functional_api.py
tests/test_musmusculus_support.py
tests/test_residue_representations.py
tests/test_variants.py