Metadata-Version: 2.1
Name: bioutils
Version: 0.5.2.post3
Summary: miscellaneous simple bioinformatics utilities and lookup tables
Home-page: https://github.com/biocommons/bioutils
Author: bioutils committers
Author-email: biocommons-dev@googlegroups.com
License: UNKNOWN
Description: bioutils -- bioinformatics utilities and lookup tables
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        |pypi_badge| |build_status| |cov_badge| |cc_badge| |issues_badge| |contributors| |license| |changelog|
        
        
        bioutils provides some common utilities and lookup tables for bioinformatics.
        
        * bioutils.accessions -- parse accessions, infer namespaces 
        * bioutils.assemblies -- Human assembly information (from NCBI/GRCh)
        * bioutils.cytobands -- map cytobands to coordinates (from UCSC cytoband tables)
        * bioutils.digests -- implementations of various digests
        * bioutils.normalize -- allele normalization (left shuffle, right shuffle, expanded, vcf)
          
        
        To use an E-Utilities API key run add it to an environment variable
        called `ncbi_api_key` and it will be used in the E-Utilities request.
        
        
        .. |build_status| image:: https://travis-ci.org/biocommons/bioutils.svg?branch=master
          :target: https://travis-ci.org/biocommons/bioutils
        
        .. |changelog| image:: https://img.shields.io/badge/docs-changelog-green.svg
           :target: https://github.com/biocommons/bioutils/tree/master/doc/changelog
        
        .. |contributors| image:: https://img.shields.io/github/contributors/biocommons/bioutils.svg
          :target: https://github.com/biocommons/bioutils
        
        .. |docs| image:: https://img.shields.io/badge/docs-readthedocs-green.svg
           :target: http://bioutils.readthedocs.io/
        
        .. |issues_badge| image:: https://img.shields.io/github/issues/biocommons/bioutils.png
          :target: https://github.com/biocommons/bioutils/issues
        
        .. |license| image:: https://img.shields.io/github/license/biocommons/bioutils.svg
          :target: https://github.com/biocommons/bioutils/blob/master/LICENSE
        
        .. |pypi_badge| image:: https://img.shields.io/pypi/v/bioutils.svg
          :target: https://pypi.org/project/bioutils/
        
        	   
        .. |cc_badge| image:: https://api.codeclimate.com/v1/badges/3a99e06ad0a842174b0a/maintainability
           :target: https://codeclimate.com/github/biocommons/bioutils/maintainability
           :alt: Maintainability
        
        .. |cov_badge| image:: https://coveralls.io/repos/github/biocommons/bioutils/badge.svg?branch=master
           :target: https://coveralls.io/github/biocommons/bioutils?branch=master
        
        
Keywords: biocommons,bioinformatics,genomics,hgvs,variation
Platform: any
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Requires-Python: >=3.6
Description-Content-Type: text/x-rst; charset=UTF-8
Provides-Extra: dev
Provides-Extra: docs
