MANIFEST.in
setup.cfg
setup.py
chiron/__init__.py
chiron/chiron_cnn_train.py
chiron/chiron_eval.py
chiron/chiron_input.py
chiron/chiron_rcnn_train.py
chiron/cnn.py
chiron/entry.py
chiron/export_test.py
chiron/load_run_test.py
chiron/rnn.py
chiron/train_test.py
chiron.egg-info/PKG-INFO
chiron.egg-info/SOURCES.txt
chiron.egg-info/dependency_links.txt
chiron.egg-info/entry_points.txt
chiron.egg-info/requires.txt
chiron.egg-info/top_level.txt
chiron/example_data/read1.fast5
chiron/example_data/read2.fast5
chiron/example_data/read3.fast5
chiron/example_data/read4.fast5
chiron/example_data/read5.fast5
chiron/example_data/output/meta/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch7_read50_strand.meta
chiron/example_data/output/meta/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch322_read269_strand.meta
chiron/example_data/output/meta/all.meta
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch134_read34_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch152_read77_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch169_read34_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch187_read82_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch199_read32_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch211_read62_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch244_read43_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch260_read102_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch280_read47_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch334_read38_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch434_read33_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch495_read102_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch60_read34_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch7_read50_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch7_read54_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch15_read243_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch17_read39_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch34_read103_strand.signal
chiron/example_data/output/raw/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch5_read253_strand.signal
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch134_read34_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch152_read77_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch169_read34_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch187_read82_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch199_read32_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch211_read62_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch244_read43_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch260_read102_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch280_read47_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch334_read38_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch434_read33_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch495_read102_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch60_read34_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch7_read50_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch7_read54_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch15_read243_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch17_read39_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch34_read103_strand_ref.fasta
chiron/example_data/output/raw/reference/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch5_read253_strand_ref.fasta
chiron/example_data/output/result/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch7_read50_strand.fasta
chiron/example_data/output/result/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch322_read269_strand.fasta
chiron/example_data/output/result/test.fasta
chiron/example_data/output/segments/IMB14_011406_LT_20170328_FNFAF13338_MN17027_mux_scan_S18_2_Watermanag_28032017_64349_ch7_read50_strand.fasta
chiron/example_data/output/segments/IMB14_011406_LT_20170328_FNFAF13338_MN17027_sequencing_run_S18_2_Watermanag_28032017_21201_ch322_read269_strand.fasta
chiron/example_data/output/segments/test.reads
chiron/model/DNA_default/checkpoint
chiron/model/DNA_default/model.ckpt-85520.data-00000-of-00001
chiron/model/DNA_default/model.ckpt-85520.index
chiron/model/DNA_default/model.ckpt-85520.meta
chiron/utils/DNA_DynaProg_NanoPore_assess_fix.cpp~
chiron/utils/__init__.py
chiron/utils/assess.sh
chiron/utils/batch_assess.sh
chiron/utils/batch_assess.sh~
chiron/utils/easy_assembler.py
chiron/utils/extract_sig_ref.py
chiron/utils/extract_sig_ref.py~
chiron/utils/labelop.py
chiron/utils/lstm.py
chiron/utils/merge.sh
chiron/utils/raw.py
chiron/utils/raw4sheng.py~
chiron/utils/unix_time.py
chiron/utils/upgrade_delta.sh~