Metadata-Version: 2.1
Name: SIRVsuite
Version: 0.1.0
Summary: SIRVsuite - a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls
Home-page: https://github.com/TomasDrozd/SIRVsuite
Author: Tomas Drozd, Andreas Tuerk
Author-email: tomas.drozd@lexogen.com, andreas.tuerk@lexogen.com
License: UNKNOWN
Project-URL: Documentation, https://github.com/Lexogen-Tools/SIRVsuite/blob/master/README.md
Keywords: SIRVsuite
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Natural Language :: English
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: License :: Other/Proprietary License
Requires-Python: >=3.6
Description-Content-Type: text/markdown
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Requires-Dist: gtfparse (==1.2.1)
Requires-Dist: kiwisolver (==1.2.0)
Requires-Dist: matplotlib (==3.3.1)
Requires-Dist: numpy (==1.19.2)
Requires-Dist: pandas (==1.1.3)
Requires-Dist: pyBigWig (==0.3.17)
Requires-Dist: pycairo (==1.20.0)
Requires-Dist: pyparsing (==2.4.7)
Requires-Dist: pysam (==0.16.0.1)
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# SIRVsuite

SIRVsuite is a command line tool to QC an RNA-Seq workflow using Lexogen's SIRV spike-in controls. For more specific details about Lexogen's SIRV spike-in controls visit: https://www.lexogen.com/sirvs/sirv-sets/.

SIRVsuite is published under the following licence [licence](https://github.com/Lexogen-Tools/SIRVsuite/blob/master/LICENCE).

**General usage**
```
SIRVsuite [-h] -i SAMPLE_SHEET -o OUTPUT_DIR [-a|--all-modules] [--coverage|--ERCC-correlation|--SIRV-concentration] [--experiment-name EXPERIMENT_NAME]
```

For more information about usage or installation please visit a SIRVsuite github repository: https://github.com/Lexogen-Tools/SIRVsuite.

# History

### 0.1.0 (2020-10-02)

- First release on PyPI.


