trunk.BIP	trunk.BIP-module.html
trunk.BIP.Bayes	trunk.BIP.Bayes-module.html
trunk.BIP.Bayes.Melding	trunk.BIP.Bayes.Melding-module.html
trunk.BIP.Bayes.Melding.basicfit	trunk.BIP.Bayes.Melding-module.html#basicfit
trunk.BIP.Bayes.Melding.dtplot	trunk.BIP.Bayes.Melding-module.html#dtplot
trunk.BIP.Bayes.Melding.phiplot	trunk.BIP.Bayes.Melding-module.html#phiplot
trunk.BIP.Bayes.Melding.enumRun	trunk.BIP.Bayes.Melding-module.html#enumRun
trunk.BIP.Bayes.Melding.mh_test	trunk.BIP.Bayes.Melding-module.html#mh_test
trunk.BIP.Bayes.Melding.main2	trunk.BIP.Bayes.Melding-module.html#main2
trunk.BIP.Bayes.Melding.thplot	trunk.BIP.Bayes.Melding-module.html#thplot
trunk.BIP.Bayes.Melding.plotRaHist	trunk.BIP.Bayes.Melding-module.html#plotRaHist
trunk.BIP.Bayes.Melding.Viz	trunk.BIP.Bayes.Melding-module.html#Viz
trunk.BIP.Bayes.Melding.model	trunk.BIP.Bayes.Melding-module.html#model
trunk.BIP.Bayes.PlotMeld	trunk.BIP.Bayes.PlotMeld-module.html
trunk.BIP.Bayes.PlotMeld.violin_plot	trunk.BIP.Bayes.PlotMeld-module.html#violin_plot
trunk.BIP.Bayes.PlotMeld.plot_series2	trunk.BIP.Bayes.PlotMeld-module.html#plot_series2
trunk.BIP.Bayes.PlotMeld.plot_par_series	trunk.BIP.Bayes.PlotMeld-module.html#plot_par_series
trunk.BIP.Bayes.PlotMeld.plot_par_violin	trunk.BIP.Bayes.PlotMeld-module.html#plot_par_violin
trunk.BIP.Bayes.PlotMeld.plot_pred	trunk.BIP.Bayes.PlotMeld-module.html#plot_pred
trunk.BIP.Bayes.PlotMeld.plot_series	trunk.BIP.Bayes.PlotMeld-module.html#plot_series
trunk.BIP.Bayes.PlotMeld.pred_new_cases	trunk.BIP.Bayes.PlotMeld-module.html#pred_new_cases
trunk.BIP.Bayes.Samplers	trunk.BIP.Bayes.Samplers-module.html
trunk.BIP.Bayes.Samplers.MCMC	trunk.BIP.Bayes.Samplers.MCMC-module.html
trunk.BIP.Bayes.general	trunk.BIP.Bayes.general-module.html
trunk.BIP.Bayes.general.bvariables	trunk.BIP.Bayes.general.bvariables-module.html
trunk.BIP.Bayes.general.bvariables.BayesVar	trunk.BIP.Bayes.general.bvariables-module.html#BayesVar
trunk.BIP.Bayes.general.bvariables.continuous_conjugate_priors	trunk.BIP.Bayes.general.bvariables-module.html#continuous_conjugate_priors
trunk.BIP.Bayes.general.bvariables.discrete_conjugate_priors	trunk.BIP.Bayes.general.bvariables-module.html#discrete_conjugate_priors
trunk.BIP.Bayes.lhs	trunk.BIP.Bayes.lhs-module.html
trunk.BIP.Bayes.lhs.lhsFromSample	trunk.BIP.Bayes.lhs-module.html#lhsFromSample
trunk.BIP.Bayes.lhs.rank_restr	trunk.BIP.Bayes.lhs-module.html#rank_restr
trunk.BIP.Bayes.lhs.lhs	trunk.BIP.Bayes.lhs-module.html#lhs
trunk.BIP.Bayes.lhs.lhsFromDensity	trunk.BIP.Bayes.lhs-module.html#lhsFromDensity
trunk.BIP.Bayes.like	trunk.BIP.Bayes.like-module.html
trunk.BIP.Bayes.like.find_best_tau	trunk.BIP.Bayes.like-module.html#find_best_tau
trunk.BIP.Bayes.like.Uniform	trunk.BIP.Bayes.like-module.html#Uniform
trunk.BIP.Bayes.like.Normal	trunk.BIP.Bayes.like-module.html#Normal
trunk.BIP.Bayes.like.Bernoulli	trunk.BIP.Bayes.like-module.html#Bernoulli
trunk.BIP.Bayes.like.Beta	trunk.BIP.Bayes.like-module.html#Beta
trunk.BIP.Bayes.like.Binomial	trunk.BIP.Bayes.like-module.html#Binomial
trunk.BIP.Bayes.like.Categor	trunk.BIP.Bayes.like-module.html#Categor
trunk.BIP.Bayes.like.Weibull	trunk.BIP.Bayes.like-module.html#Weibull
trunk.BIP.Bayes.like.Poisson	trunk.BIP.Bayes.like-module.html#Poisson
trunk.BIP.Bayes.like.Gamma	trunk.BIP.Bayes.like-module.html#Gamma
trunk.BIP.Bayes.like.Lognormal	trunk.BIP.Bayes.like-module.html#Lognormal
trunk.BIP.Bayes.like.Simple	trunk.BIP.Bayes.like-module.html#Simple
trunk.BIP.Bayes.like.Negbin	trunk.BIP.Bayes.like-module.html#Negbin
trunk.BIP.SDE	trunk.BIP.SDE-module.html
trunk.BIP.SDE.example	trunk.BIP.SDE.example-module.html
trunk.BIP.SDE.example.f1	trunk.BIP.SDE.example-module.html#f1
trunk.BIP.SDE.example.f2	trunk.BIP.SDE.example-module.html#f2
trunk.BIP.SDE.example.f3	trunk.BIP.SDE.example-module.html#f3
trunk.BIP.SDE.example.f4	trunk.BIP.SDE.example-module.html#f4
trunk.BIP.SDE.example.f5	trunk.BIP.SDE.example-module.html#f5
trunk.BIP.SDE.example.ini	trunk.BIP.SDE.example-module.html#ini
trunk.BIP.SDE.example.ct	trunk.BIP.SDE.example-module.html#ct
trunk.BIP.SDE.example.propf	trunk.BIP.SDE.example-module.html#propf
trunk.BIP.SDE.example.pt	trunk.BIP.SDE.example-module.html#pt
trunk.BIP.SDE.example.CM	trunk.BIP.SDE.example-module.html#CM
trunk.BIP.SDE.example.M	trunk.BIP.SDE.example-module.html#M
trunk.BIP.SDE.example.tmat	trunk.BIP.SDE.example-module.html#tmat
trunk.BIP.SDE.example.t0	trunk.BIP.SDE.example-module.html#t0
trunk.BIP.SDE.example.r	trunk.BIP.SDE.example-module.html#r
trunk.BIP.SDE.example.vnames	trunk.BIP.SDE.example-module.html#vnames
trunk.BIP.SDE.gillespie	trunk.BIP.SDE.gillespie-module.html
trunk.BIP.SDE.gillespie.ser	trunk.BIP.SDE.gillespie-module.html#ser
trunk.BIP.SDE.gillespie.dispatch	trunk.BIP.SDE.gillespie-module.html#dispatch
trunk.BIP.SDE.gillespie.main	trunk.BIP.SDE.gillespie-module.html#main
trunk.BIP.SDE.gillespie.p2	trunk.BIP.SDE.gillespie-module.html#p2
trunk.BIP.SDE.gillespie.p1	trunk.BIP.SDE.gillespie-module.html#p1
trunk.BIP.SMC	trunk.BIP.SMC-module.html
trunk.BIP.SMC.condensation	trunk.BIP.SMC.condensation-module.html
trunk.BIP.SMC.condensation.evaluate_gaussian	trunk.BIP.SMC.condensation-module.html#evaluate_gaussian
trunk.BIP.Viz	trunk.BIP.Viz-module.html
trunk.BIP.Viz.ascii	trunk.BIP.Viz.ascii-module.html
trunk.BIP.Viz.asciihist	trunk.BIP.Viz.asciihist-module.html
trunk.BIP.Viz.asciihist.__licence__	trunk.BIP.Viz.asciihist-module.html#__licence__
trunk.BIP.Viz.realtime	trunk.BIP.Viz.realtime-module.html
trunk.BIP.Bayes.Melding.FitModel	trunk.BIP.Bayes.Melding.FitModel-class.html
trunk.BIP.Bayes.Melding.FitModel._rms_error	trunk.BIP.Bayes.Melding.FitModel-class.html#_rms_error
trunk.BIP.Bayes.Melding.FitModel.prior_sample	trunk.BIP.Bayes.Melding.FitModel-class.html#prior_sample
trunk.BIP.Bayes.Melding.FitModel.__init__	trunk.BIP.Bayes.Melding.FitModel-class.html#__init__
trunk.BIP.Bayes.Melding.FitModel._monitor_plot	trunk.BIP.Bayes.Melding.FitModel-class.html#_monitor_plot
trunk.BIP.Bayes.Melding.FitModel.plot_results	trunk.BIP.Bayes.Melding.FitModel-class.html#plot_results
trunk.BIP.Bayes.Melding.FitModel.run	trunk.BIP.Bayes.Melding.FitModel-class.html#run
trunk.BIP.Bayes.Melding.FitModel.set_priors	trunk.BIP.Bayes.Melding.FitModel-class.html#set_priors
trunk.BIP.Bayes.Melding.FitModel._init_priors	trunk.BIP.Bayes.Melding.FitModel-class.html#_init_priors
trunk.BIP.Bayes.Melding.FitModel._monitor_setup	trunk.BIP.Bayes.Melding.FitModel-class.html#_monitor_setup
trunk.BIP.Bayes.Melding.FitModel._get95_bands	trunk.BIP.Bayes.Melding.FitModel-class.html#_get95_bands
trunk.BIP.Bayes.Melding.FitModel.optimize	trunk.BIP.Bayes.Melding.FitModel-class.html#optimize
trunk.BIP.Bayes.Melding.FitModel._read_results	trunk.BIP.Bayes.Melding.FitModel-class.html#_read_results
trunk.BIP.Bayes.Melding.FitModel.do_inference	trunk.BIP.Bayes.Melding.FitModel-class.html#do_inference
trunk.BIP.Bayes.Melding.Meld	trunk.BIP.Bayes.Melding.Meld-class.html
trunk.BIP.Bayes.Melding.Meld.filtM	trunk.BIP.Bayes.Melding.Meld-class.html#filtM
trunk.BIP.Bayes.Melding.Meld.abcRun	trunk.BIP.Bayes.Melding.Meld-class.html#abcRun
trunk.BIP.Bayes.Melding.Meld._output_loglike	trunk.BIP.Bayes.Melding.Meld-class.html#_output_loglike
trunk.BIP.Bayes.Melding.Meld.setTheta	trunk.BIP.Bayes.Melding.Meld-class.html#setTheta
trunk.BIP.Bayes.Melding.Meld.__init__	trunk.BIP.Bayes.Melding.Meld-class.html#__init__
trunk.BIP.Bayes.Melding.Meld.sir	trunk.BIP.Bayes.Melding.Meld-class.html#sir
trunk.BIP.Bayes.Melding.Meld.logPooling	trunk.BIP.Bayes.Melding.Meld-class.html#logPooling
trunk.BIP.Bayes.Melding.Meld.runModel	trunk.BIP.Bayes.Melding.Meld-class.html#runModel
trunk.BIP.Bayes.Melding.Meld.setPhi	trunk.BIP.Bayes.Melding.Meld-class.html#setPhi
trunk.BIP.Bayes.Melding.Meld.setThetaFromData	trunk.BIP.Bayes.Melding.Meld-class.html#setThetaFromData
trunk.BIP.Bayes.Melding.Meld.setPhiFromData	trunk.BIP.Bayes.Melding.Meld-class.html#setPhiFromData
trunk.BIP.Bayes.Melding.Meld.run	trunk.BIP.Bayes.Melding.Meld-class.html#run
trunk.BIP.Bayes.Melding.Meld.imp_sample	trunk.BIP.Bayes.Melding.Meld-class.html#imp_sample
trunk.BIP.Bayes.Melding.Meld.getPosteriors	trunk.BIP.Bayes.Melding.Meld-class.html#getPosteriors
trunk.BIP.Bayes.Melding.Meld.mcmc_run	trunk.BIP.Bayes.Melding.Meld-class.html#mcmc_run
trunk.BIP.Bayes.Melding.Meld.model_as_ra	trunk.BIP.Bayes.Melding.Meld-class.html#model_as_ra
trunk.BIP.Bayes.Melding.Meld.add_salt	trunk.BIP.Bayes.Melding.Meld-class.html#add_salt
trunk.BIP.Bayes.Samplers.MCMC.Dream	trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html
trunk.BIP.Bayes.Samplers.MCMC._Sampler.trace_acceptance	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_acceptance
trunk.BIP.Bayes.Samplers.MCMC._Sampler._R	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_R
trunk.BIP.Bayes.Samplers.MCMC._Sampler.__init__	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#__init__
trunk.BIP.Bayes.Samplers.MCMC._Sampler.dimensions	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#dimensions
trunk.BIP.Bayes.Samplers.MCMC._Sampler._po	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_po
trunk.BIP.Bayes.Samplers.MCMC._Sampler.term_pool	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#term_pool
trunk.BIP.Bayes.Samplers.MCMC._Sampler.gr_convergence	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_convergence
trunk.BIP.Bayes.Samplers.MCMC._Sampler.po	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#po
trunk.BIP.Bayes.Samplers.MCMC.Dream._get_likelihoods	trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_get_likelihoods
trunk.BIP.Bayes.Samplers.MCMC._Sampler.gr_R	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_R
trunk.BIP.Bayes.Samplers.MCMC._Sampler.trace_convergence	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_convergence
trunk.BIP.Bayes.Samplers.MCMC.Dream.step	trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#step
trunk.BIP.Bayes.Samplers.MCMC._Sampler._dimensions	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_dimensions
trunk.BIP.Bayes.Samplers.MCMC.Dream.__init	trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#__init
trunk.BIP.Bayes.Samplers.MCMC.Dream._propose	trunk.BIP.Bayes.Samplers.MCMC.Dream-class.html#_propose
trunk.BIP.Bayes.Samplers.MCMC.Metropolis	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html
trunk.BIP.Bayes.Samplers.MCMC.Metropolis._imp_sample	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_imp_sample
trunk.BIP.Bayes.Samplers.MCMC._Sampler.trace_acceptance	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_acceptance
trunk.BIP.Bayes.Samplers.MCMC._Sampler._R	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_R
trunk.BIP.Bayes.Samplers.MCMC.Metropolis.__init__	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#__init__
trunk.BIP.Bayes.Samplers.MCMC._Sampler.dimensions	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#dimensions
trunk.BIP.Bayes.Samplers.MCMC._Sampler._po	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_po
trunk.BIP.Bayes.Samplers.MCMC.Metropolis.watch_chain	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#watch_chain
trunk.BIP.Bayes.Samplers.MCMC._Sampler.term_pool	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#term_pool
trunk.BIP.Bayes.Samplers.MCMC._Sampler.gr_convergence	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_convergence
trunk.BIP.Bayes.Samplers.MCMC._Sampler.po	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#po
trunk.BIP.Bayes.Samplers.MCMC.Metropolis._rms_fit	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_rms_fit
trunk.BIP.Bayes.Samplers.MCMC._Sampler.gr_R	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_R
trunk.BIP.Bayes.Samplers.MCMC._Sampler.trace_convergence	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_convergence
trunk.BIP.Bayes.Samplers.MCMC.Metropolis.step	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#step
trunk.BIP.Bayes.Samplers.MCMC.Metropolis._add_salt	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_add_salt
trunk.BIP.Bayes.Samplers.MCMC._Sampler._dimensions	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_dimensions
trunk.BIP.Bayes.Samplers.MCMC.Metropolis._accept	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_accept
trunk.BIP.Bayes.Samplers.MCMC.Metropolis._propose	trunk.BIP.Bayes.Samplers.MCMC.Metropolis-class.html#_propose
trunk.BIP.Bayes.Samplers.MCMC._Sampler	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html
trunk.BIP.Bayes.Samplers.MCMC._Sampler.trace_acceptance	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_acceptance
trunk.BIP.Bayes.Samplers.MCMC._Sampler._R	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_R
trunk.BIP.Bayes.Samplers.MCMC._Sampler.__init__	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#__init__
trunk.BIP.Bayes.Samplers.MCMC._Sampler.dimensions	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#dimensions
trunk.BIP.Bayes.Samplers.MCMC._Sampler._po	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_po
trunk.BIP.Bayes.Samplers.MCMC._Sampler.term_pool	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#term_pool
trunk.BIP.Bayes.Samplers.MCMC._Sampler.gr_convergence	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_convergence
trunk.BIP.Bayes.Samplers.MCMC._Sampler.po	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#po
trunk.BIP.Bayes.Samplers.MCMC._Sampler.gr_R	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#gr_R
trunk.BIP.Bayes.Samplers.MCMC._Sampler.trace_convergence	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#trace_convergence
trunk.BIP.Bayes.Samplers.MCMC._Sampler._dimensions	trunk.BIP.Bayes.Samplers.MCMC._Sampler-class.html#_dimensions
trunk.BIP.Bayes.general.bvariables._BayesVar	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html
trunk.BIP.Bayes.general.bvariables._BayesVar._update	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_update
trunk.BIP.Bayes.general.bvariables._BayesVar._flavorize	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_flavorize
trunk.BIP.Bayes.general.bvariables._BayesVar.__str__	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#__str__
trunk.BIP.Bayes.general.bvariables._BayesVar._likelihood	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_likelihood
trunk.BIP.Bayes.general.bvariables._BayesVar.__init__	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#__init__
trunk.BIP.Bayes.general.bvariables._BayesVar.get_prior_dist	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_dist
trunk.BIP.Bayes.general.bvariables._BayesVar.add_data	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#add_data
trunk.BIP.Bayes.general.bvariables._BayesVar._post_from_conjugate	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_post_from_conjugate
trunk.BIP.Bayes.general.bvariables._BayesVar.get_posterior_sample	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_posterior_sample
trunk.BIP.Bayes.general.bvariables._BayesVar.get_prior_sample	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_sample
trunk.BIP.Bayes.general.bvariables.__BayesC	trunk.BIP.Bayes.general.bvariables.__BayesC-class.html
trunk.BIP.Bayes.general.bvariables._BayesVar._update	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_update
trunk.BIP.Bayes.general.bvariables._BayesVar._flavorize	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_flavorize
trunk.BIP.Bayes.general.bvariables._BayesVar.__str__	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#__str__
trunk.BIP.Bayes.general.bvariables._BayesVar.get_prior_sample	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_sample
trunk.BIP.Bayes.general.bvariables.__BayesC.__init__	trunk.BIP.Bayes.general.bvariables.__BayesC-class.html#__init__
trunk.BIP.Bayes.general.bvariables._BayesVar.get_prior_dist	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_dist
trunk.BIP.Bayes.general.bvariables._BayesVar.add_data	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#add_data
trunk.BIP.Bayes.general.bvariables._BayesVar._post_from_conjugate	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_post_from_conjugate
trunk.BIP.Bayes.general.bvariables._BayesVar.get_posterior_sample	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_posterior_sample
trunk.BIP.Bayes.general.bvariables._BayesVar._likelihood	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_likelihood
trunk.BIP.Bayes.general.bvariables.__BayesD	trunk.BIP.Bayes.general.bvariables.__BayesD-class.html
trunk.BIP.Bayes.general.bvariables._BayesVar._update	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_update
trunk.BIP.Bayes.general.bvariables._BayesVar._flavorize	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_flavorize
trunk.BIP.Bayes.general.bvariables._BayesVar.__str__	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#__str__
trunk.BIP.Bayes.general.bvariables._BayesVar.get_prior_sample	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_sample
trunk.BIP.Bayes.general.bvariables.__BayesD.__init__	trunk.BIP.Bayes.general.bvariables.__BayesD-class.html#__init__
trunk.BIP.Bayes.general.bvariables._BayesVar.get_prior_dist	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_prior_dist
trunk.BIP.Bayes.general.bvariables._BayesVar.add_data	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#add_data
trunk.BIP.Bayes.general.bvariables._BayesVar._post_from_conjugate	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_post_from_conjugate
trunk.BIP.Bayes.general.bvariables._BayesVar.get_posterior_sample	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#get_posterior_sample
trunk.BIP.Bayes.general.bvariables._BayesVar._likelihood	trunk.BIP.Bayes.general.bvariables._BayesVar-class.html#_likelihood
trunk.BIP.SDE.gillespie.Model	trunk.BIP.SDE.gillespie.Model-class.html
trunk.BIP.SDE.gillespie.Model.GSSA	trunk.BIP.SDE.gillespie.Model-class.html#GSSA
trunk.BIP.SDE.gillespie.Model.run	trunk.BIP.SDE.gillespie.Model-class.html#run
trunk.BIP.SDE.gillespie.Model.getStats	trunk.BIP.SDE.gillespie.Model-class.html#getStats
trunk.BIP.SDE.gillespie.Model.__init__	trunk.BIP.SDE.gillespie.Model-class.html#__init__
trunk.BIP.SMC.condensation.Condensation	trunk.BIP.SMC.condensation.Condensation-class.html
trunk.BIP.SMC.condensation.Condensation.calculateBaseWeights	trunk.BIP.SMC.condensation.Condensation-class.html#calculateBaseWeights
trunk.BIP.SMC.condensation.Condensation.updateAfterIterating	trunk.BIP.SMC.condensation.Condensation-class.html#updateAfterIterating
trunk.BIP.SMC.condensation.Condensation.runFilter	trunk.BIP.SMC.condensation.Condensation-class.html#runFilter
trunk.BIP.SMC.condensation.Condensation.predictNewBases	trunk.BIP.SMC.condensation.Condensation-class.html#predictNewBases
trunk.BIP.SMC.condensation.Condensation.pickBaseSample	trunk.BIP.SMC.condensation.Condensation-class.html#pickBaseSample
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trunk.BIP.SMC.condensation.GlobalData	trunk.BIP.SMC.condensation.GlobalData-class.html
trunk.BIP.SMC.condensation.GlobalData.__init__	trunk.BIP.SMC.condensation.GlobalData-class.html#__init__
trunk.BIP.SMC.condensation.IterationData	trunk.BIP.SMC.condensation.IterationData-class.html
trunk.BIP.SMC.condensation.IterationData.__init__	trunk.BIP.SMC.condensation.IterationData-class.html#__init__
trunk.BIP.SMC.condensation.Model	trunk.BIP.SMC.condensation.Model-class.html
trunk.BIP.SMC.condensation.Model.predictSamplePosition	trunk.BIP.SMC.condensation.Model-class.html#predictSamplePosition
trunk.BIP.SMC.condensation.Model.obtainObservations	trunk.BIP.SMC.condensation.Model-class.html#obtainObservations
trunk.BIP.SMC.condensation.Model.evaluateObservationDensity	trunk.BIP.SMC.condensation.Model-class.html#evaluateObservationDensity
trunk.BIP.SMC.condensation.Model.iterate	trunk.BIP.SMC.condensation.Model-class.html#iterate
trunk.BIP.SMC.condensation.Model.display	trunk.BIP.SMC.condensation.Model-class.html#display
trunk.BIP.SMC.condensation.Model.__init__	trunk.BIP.SMC.condensation.Model-class.html#__init__
trunk.BIP.SMC.condensation.Model.setupPriorConditions	trunk.BIP.SMC.condensation.Model-class.html#setupPriorConditions
trunk.BIP.Viz.ascii.Histogram	trunk.BIP.Viz.ascii.Histogram-class.html
trunk.BIP.Viz.ascii.Histogram.vertical	trunk.BIP.Viz.ascii.Histogram-class.html#vertical
trunk.BIP.Viz.ascii.Histogram.horizontal	trunk.BIP.Viz.ascii.Histogram-class.html#horizontal
trunk.BIP.Viz.ascii.Histogram.__init__	trunk.BIP.Viz.ascii.Histogram-class.html#__init__
trunk.BIP.Viz.asciihist.Histogram	trunk.BIP.Viz.asciihist.Histogram-class.html
trunk.BIP.Viz.asciihist.Histogram.vertical	trunk.BIP.Viz.asciihist.Histogram-class.html#vertical
trunk.BIP.Viz.asciihist.Histogram.horizontal	trunk.BIP.Viz.asciihist.Histogram-class.html#horizontal
trunk.BIP.Viz.asciihist.Histogram.__init__	trunk.BIP.Viz.asciihist.Histogram-class.html#__init__
trunk.BIP.Viz.realtime.RTplot	trunk.BIP.Viz.realtime.RTplot-class.html
trunk.BIP.Viz.realtime.RTplot.plothist	trunk.BIP.Viz.realtime.RTplot-class.html#plothist
trunk.BIP.Viz.realtime.RTplot.clearFig	trunk.BIP.Viz.realtime.RTplot-class.html#clearFig
trunk.BIP.Viz.realtime.RTplot.plotlines	trunk.BIP.Viz.realtime.RTplot-class.html#plotlines
trunk.BIP.Viz.realtime.RTplot._linesFromRA	trunk.BIP.Viz.realtime.RTplot-class.html#_linesFromRA
trunk.BIP.Viz.realtime.RTplot.scatter	trunk.BIP.Viz.realtime.RTplot-class.html#scatter
trunk.BIP.Viz.realtime.RTplot.__init__	trunk.BIP.Viz.realtime.RTplot-class.html#__init__
trunk.BIP.Viz.realtime.RTplot._histFromRA	trunk.BIP.Viz.realtime.RTplot-class.html#_histFromRA
trunk.BIP.Viz.realtime.RTpyplot	trunk.BIP.Viz.realtime.RTpyplot-class.html
trunk.BIP.Viz.realtime.RTpyplot._setup	trunk.BIP.Viz.realtime.RTpyplot-class.html#_setup
trunk.BIP.Viz.realtime.RTpyplot.__init__	trunk.BIP.Viz.realtime.RTpyplot-class.html#__init__
trunk.BIP.Viz.realtime.RTpyplot.plotlines	trunk.BIP.Viz.realtime.RTpyplot-class.html#plotlines
