README.rst
setup.cfg
setup.py
./cnvkit.py
./scripts/cnn_updater.py
./scripts/coverage_bin_size.py
./scripts/guess_baits.py
./scripts/refFlat2bed.py
./scripts/reference2targets.py
/home/etal/code/cnvkit/cnvkit.py
/home/etal/code/cnvkit/scripts/cnn_updater.py
/home/etal/code/cnvkit/scripts/coverage_bin_size.py
/home/etal/code/cnvkit/scripts/guess_baits.py
/home/etal/code/cnvkit/scripts/refFlat2bed.py
/home/etal/code/cnvkit/scripts/reference2targets.py
CNVkit.egg-info/PKG-INFO
CNVkit.egg-info/SOURCES.txt
CNVkit.egg-info/dependency_links.txt
CNVkit.egg-info/requires.txt
CNVkit.egg-info/top_level.txt
cnvlib/__init__.py
cnvlib/_version.py
cnvlib/access.py
cnvlib/antitarget.py
cnvlib/autobin.py
cnvlib/batch.py
cnvlib/call.py
cnvlib/cmdutil.py
cnvlib/cnary.py
cnvlib/commands.py
cnvlib/core.py
cnvlib/coverage.py
cnvlib/descriptives.py
cnvlib/diagram.py
cnvlib/export.py
cnvlib/fix.py
cnvlib/heatmap.py
cnvlib/importers.py
cnvlib/jenks.py
cnvlib/metrics.py
cnvlib/parallel.py
cnvlib/params.py
cnvlib/plots.py
cnvlib/reference.py
cnvlib/reports.py
cnvlib/samutil.py
cnvlib/scatter.py
cnvlib/segfilters.py
cnvlib/smoothing.py
cnvlib/target.py
cnvlib/vary.py
cnvlib/genome/__init__.py
cnvlib/genome/chromsort.py
cnvlib/genome/combiners.py
cnvlib/genome/gary.py
cnvlib/genome/intersect.py
cnvlib/genome/merge.py
cnvlib/genome/pdcombiners.py
cnvlib/genome/rangelabel.py
cnvlib/genome/roman.py
cnvlib/genome/subdivide.py
cnvlib/genome/subtract.py
cnvlib/segmentation/__init__.py
cnvlib/segmentation/cbs.py
cnvlib/segmentation/flasso.py
cnvlib/segmentation/haar.py
cnvlib/tabio/__init__.py
cnvlib/tabio/bedio.py
cnvlib/tabio/genepred.py
cnvlib/tabio/gff.py
cnvlib/tabio/picard.py
cnvlib/tabio/seg.py
cnvlib/tabio/simplevcf.py
cnvlib/tabio/tab.py
cnvlib/tabio/textcoord.py
cnvlib/tabio/util.py
cnvlib/tabio/vcfio.py
test/test_cnvlib.py
test/test_genome.py
test/test_haar.py
test/test_io.py
test/test_r.py