Metadata-Version: 2.1
Name: bcl2fq-local
Version: 0.1.1
Summary: Bcl2fastq wrapper
Home-page: https://github.com/seahurt/bcl2fq-local
Author: Wang Jianghao
Author-email: wangjianghao@matridx.com
License: MIT
Platform: CentOS 7.0+
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: System Administrators
Classifier: Operating System :: POSIX :: Linux
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Description-Content-Type: text/markdown
Requires-Dist: xmltodict

# bcl2fq-local

A bcl2fastq wrapper

# Usage
```text
usage:  bcl2fq-local -i <seq_dir> -o <ou_dir>

optional arguments:
    --sample-sheet Path  Using custom sample sheet file
    --mismatch N         Mismatch for barcode, default: 1
    --process N          Process number for demultiplexing and processing
    --io-process N       Process number for reading and writing
    --binpath   Path     Bcl2fastq binary file path, default: /usr/local/bin/bcl2fastq
    --cmd-only           Only print the cmd without running it
```



