CHANGELOG.md
CITATION.cff
CONTRIBUTING.md
LICENSE
MANIFEST.in
NOTICE
README.md
pyproject.toml
docs/SETUP_NOTES.md
foldenv/__init__.py
foldenv/analysis.py
foldenv/config.py
foldenv/constants.py
foldenv/contacts.py
foldenv/context.py
foldenv/decisions.yaml
foldenv/dssp.py
foldenv/embedding.py
foldenv/fetch.py
foldenv/persist.py
foldenv/plm.py
foldenv/tool.py
foldenv/tool_spec.json
foldenv/validation.py
foldenv.egg-info/PKG-INFO
foldenv.egg-info/SOURCES.txt
foldenv.egg-info/dependency_links.txt
foldenv.egg-info/requires.txt
foldenv.egg-info/top_level.txt
tests/TESTS.md
tests/__init__.py
tests/test_analysis.py
tests/test_config.py
tests/test_config_nondefaults.py
tests/test_contacts.py
tests/test_context.py
tests/test_context_persist_wiring.py
tests/test_dssp.py
tests/test_embedding.py
tests/test_fetch.py
tests/test_optional_deps.py
tests/test_persist.py
tests/test_persist_transformers_key.py
tests/test_plm_version_guard.py
tests/test_tool.py
tests/test_validation.py
tests/test_version_consistency.py