LICENSE
README.md
pyproject.toml
setup.py
genotools/__init__.py
genotools/__main__.py
genotools/dependencies.py
genotools/download_refs.py
genotools/imputation.py
genotools/utils.py
genotools/ancestry/__init__.py
genotools/ancestry/cohort.py
genotools/ancestry/config.py
genotools/ancestry/diagnostics.py
genotools/ancestry/fit_validation.py
genotools/ancestry/model.py
genotools/ancestry/preprocessing.py
genotools/ancestry/results.py
genotools/ancestry/reducers/__init__.py
genotools/ancestry/reducers/pca.py
genotools/ancestry/reducers/umap_reducer.py
genotools/cli/__init__.py
genotools/cli/output.py
genotools/cli/parser.py
genotools/cli/runner.py
genotools/cli/sample_fate.py
genotools/container/Dockerfile
genotools/container/GP2_merge_APRIL_2023_ready_genotools_callrate_sex_ancestry_umap_linearsvc_ancestry_model.pkl
genotools/container/GP2_merge_release6_NOVEMBER_ready_genotools_qc_umap_linearsvc_ancestry_model.pkl
genotools/container/__init__.py
genotools/container/requirements.txt
genotools/container/run.py
genotools/core/__init__.py
genotools/core/config.py
genotools/core/exceptions.py
genotools/core/executors.py
genotools/core/genotypes.py
genotools/core/logging.py
genotools/core/provenance.py
genotools/core/validation.py
genotools/core/version.py
genotools/gwas/__init__.py
genotools/gwas/config.py
genotools/gwas/pipeline.py
genotools/gwas/results.py
genotools/gwas/steps/__init__.py
genotools/gwas/steps/association.py
genotools/gwas/steps/pca.py
genotools/plotting/__init__.py
genotools/plotting/cli.py
genotools/plotting/render.py
genotools/plotting/report.py
genotools/plotting/style.py
genotools/plotting/plots/__init__.py
genotools/plotting/plots/ancestry.py
genotools/plotting/plots/base.py
genotools/plotting/plots/gwas.py
genotools/plotting/plots/qc_summary.py
genotools/plotting/plots/sample_qc.py
genotools/plotting/plots/variant_qc.py
genotools/qc/__init__.py
genotools/qc/config.py
genotools/qc/plot_data.py
genotools/qc/results.py
genotools/qc/steps/__init__.py
genotools/qc/steps/callrate.py
genotools/qc/steps/case_control.py
genotools/qc/steps/haplotype.py
genotools/qc/steps/heterozygosity.py
genotools/qc/steps/hwe.py
genotools/qc/steps/ld_prune.py
genotools/qc/steps/relatedness.py
genotools/qc/steps/sex.py
genotools/qc/steps/variant_missingness.py
tests/__init__.py
tests/regression/__init__.py
tests/regression/compare.py
tests/regression/conftest.py
tests/regression/test_compare_genotypes.py
tests/regression/test_compare_gwas.py
tests/regression/test_logging.py
tests/regression/test_parity.py
tests/regression/test_qc_steps.py
tests/unit/__init__.py
tests/unit/test_core.py
tests/unit/test_ancestry/__init__.py
tests/unit/test_ancestry/conftest.py
tests/unit/test_ancestry/test_cohort.py
tests/unit/test_ancestry/test_config.py
tests/unit/test_ancestry/test_preprocessing.py
tests/unit/test_ancestry/test_reducers.py
tests/unit/test_ancestry/test_results.py
tests/unit/test_cli/__init__.py
tests/unit/test_cli/test_output.py
tests/unit/test_cli/test_parser.py
tests/unit/test_cli/test_runner.py
tests/unit/test_cli/test_runner_regression.py
tests/unit/test_gwas/__init__.py
tests/unit/test_gwas/test_config.py
tests/unit/test_gwas/test_results.py
tests/unit/test_gwas/test_steps.py
tests/unit/test_gwas/test_steps_regression.py
tests/unit/test_qc/__init__.py
tests/unit/test_qc/test_config.py
tests/unit/test_qc/test_results.py
the_real_genotools.egg-info/PKG-INFO
the_real_genotools.egg-info/SOURCES.txt
the_real_genotools.egg-info/dependency_links.txt
the_real_genotools.egg-info/entry_points.txt
the_real_genotools.egg-info/requires.txt
the_real_genotools.egg-info/top_level.txt