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AUTHORS.rst
CHANGELOG.rst
CONTRIBUTING.rst
LICENSE.txt
README.rst
make_package.sh
pyproject.toml
requirements.txt
setup.cfg
setup.py
tox.ini
docs/Makefile
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/license.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
src/py_cmdtabs/__init__.py
src/py_cmdtabs/cli_manager.py
src/py_cmdtabs/cmdtabs.py
src/py_cmdtabs/main_modules.py
src/py_cmdtabs.egg-info/PKG-INFO
src/py_cmdtabs.egg-info/SOURCES.txt
src/py_cmdtabs.egg-info/dependency_links.txt
src/py_cmdtabs.egg-info/entry_points.txt
src/py_cmdtabs.egg-info/not-zip-safe
src/py_cmdtabs.egg-info/requires.txt
src/py_cmdtabs.egg-info/top_level.txt
tests/__init__.py
tests/conftest.py
tests/test_cli_manager.py
tests/test_cmdtabs_lib.py
tests/test_compressed_pipes.sh
tests/test_expanded_methods.py
tests/test_input_parsing.py
tests/test_io.py
tests/cli_example_report/Report.html
tests/cli_example_report/example
tests/cli_example_report/launch.sh
tests/cli_example_report/styles.css
tests/cli_example_report/template.txt
tests/cli_example_report/outputs/blackfiltered_long_table
tests/cli_example_report/outputs/filtered_long_table
tests/cli_example_report/outputs/ref_filtered_disease_cluster_ref_rnd
tests/cli_example_report/outputs/wide_table
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tests/cli_example_report/subtemplates/table_linker
tests/cli_example_report/subtemplates/tag_table
tests/cli_example_report/subtemplates/transform_to_latex
tests/cli_example_report/subtemplates/transpose_table
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tests/cli_example_report/tables/cluster_genes_dis_desagg
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tests/cli_example_report/tables/clusts_to_filter
tests/cli_example_report/tables/disease_cluster
tests/cli_example_report/tables/disease_cluster_ref_rnd
tests/cli_example_report/tables/disease_cluster_uniq
tests/cli_example_report/tables/disease_gene
tests/cli_example_report/tables/long_disease_cluster
tests/cli_example_report/tables/long_table
tests/cli_example_report/tables/metrics_table
tests/cli_example_report/tables/mondo_to_orpha
tests/cli_example_report/tables/nets_to_filter
tests/cli_example_report/tables/organization
tests/cli_example_report/tables/simple_table
tests/cli_example_report/tables/tracker
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tests/data_tests/agg_data_3_columns.txt
tests/data_tests/all_metrics
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tests/data_tests/ref_output_scripts/column_matching_hard_various_keys_and_every_columns
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tests/data_tests/ref_output_scripts/intersect_columns_default_stdin_a
tests/data_tests/ref_output_scripts/intersect_columns_default_stdin_b
tests/data_tests/ref_output_scripts/intersect_columns_full
tests/data_tests/ref_output_scripts/linked_table
tests/data_tests/ref_output_scripts/linked_table3
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tests/data_tests/ref_output_scripts/replaced_name
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tests/data_tests/ref_output_scripts/transposed_cluster_genes_from_excel.txt
tests/data_tests/ref_output_scripts/transposed_column_matching_hard
tests/data_tests/ref_output_scripts/transposed_intersect_columns_default
tests/data_tests/ref_output_scripts/transposed_linked_table
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tests/data_tests/ref_output_scripts/subset_table_fold/mondo_genes_chunk2
tests/data_tests/transposed/all_metrics
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tests/data_tests/transposed/cluster_genes_dis_agg
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tests/data_tests/transposed/disease_cluster
tests/data_tests/transposed/disease_cluster_uniq
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tests/data_tests/transposed/tranpose_data.py