Markdown
PyYAML
matplotlib>=3.5.2
numpy>=1.24
Pillow>=8.1.2
PyQt6
read-lif
scikit-image>=0.19.3
scipy>=1.7.3
scikit-learn>=1.0.2
tifffile>=2021.11.2
tqdm
natsort
numexpr
urllib3
qtawesome
pandas
roifile
prettytable
pyperclip
QtPy>=2.1.0
Deprecated
Requests
batoolset>=0.2.0
batoolset-gui>=0.2.4
staplot>=0.1.0
pyautogui
imagecodecs
psutil
python-pptx
latex2mathml
mathml2omml
pylatexenc
pypdfium2
qtpy-ai-sidecar>=0.1.4
mcp<2,>=1.12

[ai]
mcp<2,>=1.12

[all]
mcp<2,>=1.12
qtpy-ai-sidecar>=0.1.4
av
opencv-python-headless
pyimagej
pymupdf

[all:python_version >= "3.11"]
zarr>=3

[chat]
mcp<2,>=1.12
qtpy-ai-sidecar>=0.1.4

[fiji]
pyimagej

[omero]
omero-py

[pdf]
pymupdf

[test]
pytest
pytest-qt
pytest-timeout

[video]
av
opencv-python-headless

[zarr]

[zarr:python_version >= "3.11"]
zarr>=3
