LICENSE
MANIFEST.in
README.md
pyproject.toml
antspymm/__init__.py
antspymm/mm.py
antspymm.egg-info/PKG-INFO
antspymm.egg-info/SOURCES.txt
antspymm.egg-info/dependency_links.txt
antspymm.egg-info/requires.txt
antspymm.egg-info/top_level.txt
docs/adni_rsfmri_2_nrg_conversion.py
docs/antspymm_annotated_output_tree.pages
docs/antspymm_annotated_output_tree.txt
docs/antspymm_data_dictionary.csv
docs/bids_cohort_example.py
docs/blind_qc.Rmd
docs/blind_qc.html
docs/convert_adni_dti_to_nrg.R
docs/deepnbm.jpg
docs/describe_mm_data.R
docs/example_antspymm_output.csv
docs/example_run_from_directory.py
docs/make_dict_table.Rmd
docs/make_dict_table.html
docs/nrg_cohort_example.py
docs/ptbp_nrg.py
docs/roi_visualization.py
docs/roi_visualization_ppmi.py
docs/step1_blind_qc.py
docs/step2_outlierness.py
docs/step3_mm_nrg_csv.py
docs/step4_aggregate.py
docs/template_overlays.py
docs/ukbb_to_nrg_processing.py
docs/ukbb_to_nrg_processing2.py
tests/bids_2_nrg.py
tests/blind_qc.py
tests/deformation_gradient_reo.py
tests/dipy_dti_recon.py
tests/dti_recon.py
tests/dti_reg.py
tests/dwi_rebasing.py
tests/dwi_run.py
tests/dwi_run_ptbp_scrub.py
tests/flair_run.py
tests/joint_dti_recon.py
tests/mm.py
tests/mm_csv.py
tests/mm_nrg.py
tests/nrg_validation.py
tests/outlierness.py
tests/parallel_study_aggregation_example.py
tests/perfusion_ptbp.py
tests/perfusion_run.py
tests/perfusion_run_nnl.py
tests/rsfmri_run.py
tests/rsfmri_run_minimal.py
tests/test_loop.py
tests/test_reference_run.py
tests/test_rsfmri_run_minimal_ptbp.py
tests/testsr.py
tests/ukbb_rsfmri.py
tests/visualize_tractogram.py