LICENSE
MANIFEST.in
README.md
pyproject.toml
requirements.txt
src/bp_quant.egg-info/PKG-INFO
src/bp_quant.egg-info/SOURCES.txt
src/bp_quant.egg-info/dependency_links.txt
src/bp_quant.egg-info/entry_points.txt
src/bp_quant.egg-info/requires.txt
src/bp_quant.egg-info/top_level.txt
src/bp_quant/alignment/__init__.py
src/bp_quant/alignment/generate_alignment.py
src/bp_quant/general/__init__.py
src/bp_quant/general/command_line.py
src/bp_quant/general/pipeline.py
src/bp_quant/general/version.py
src/bp_quant/indexing/__init__.py
src/bp_quant/indexing/generate_index.py
src/bp_quant/io/__init__.py
src/bp_quant/io/csv_to_fasta.py
src/bp_quant/io/file_handler.py
src/bp_quant/io/file_headers.py
src/bp_quant/io/io_methods.py
src/bp_quant/io/seq_table.py
src/bp_quant/plotting/__init__.py
src/bp_quant/plotting/plot_reads.py
src/bp_quant/quantification/__init__.py
src/bp_quant/quantification/counting.py
src/bp_quant/quantification/coverage.py
src/bp_quant/quantification/read_classification.py
src/bp_quant/quantification/read_processing.py
src/bp_quant/quantification/requantify.py
src/bp_quant/validation/__init__.py
src/bp_quant/validation/alignment_info.py