# build / distribution
dist/
build/
*.egg-info/
*.egg
MANIFEST

# pytest / coverage
.coverage
.coverage.*
.nox/
.pytest_cache/
htmlcov/

# type checkers
.mypy_cache/
.pytype/
.python-version

# generated tool outputs
*.janno
*.janno.done
*.hq.bam
*.hq.bam.bai
*.hq.bam.done
*.src
*.position.bed
.DS_Store

# editors
profile/
.idea/
.run/
*.swp
*~

# project-local
.omc/
.serena/
TODO.md
CLAUDE.md
debug/
dependency/
docs/_build/
__pycache__/
